PP_003404F.3

Sierra_Leone/PL-25-07-013|Tonkolili|SLE|2025-07-03/2025-07-03
Allan K. O. Campbell, Martin Faye, Mohamed Kane, Mignane Ndiaye, Ifeanyi Omah, Andy Mahine Diouf, Mamadaou Aliou Barry, Aboubacry Gaye, Moussa Moise Diagne, Aminata Koroma, Mohamed Boie, Zikan Koroma, Joseph Kanu, Boubacar Diallo, Abdurahmane Sow, Amadou Alpha Sall, Ibrahima Soce Fall, Doris Harding, James Squire, Mohamed Alex Vandi & Foday Sahr

National Public Health Agency (NPHA) Sierra Leone, Central Public Health Reference Laboratory, Institute Pasteur de Dakar,University of Edinburg

Sample details

Collection date
2025-07-03
Sampling location
Sierra Leone (Tonkolili)

Data use terms

Data use terms
OPEN
Data use terms URL

Clade & Lineage

Clade
IIb
Outbreak
sh2017
Lineage
G.1

INSDC

INSDC accession
BioProject accession
BioSample accession
GCA accession

Submission details

Submission ID
PL-25-07-013|Tonkolili|SLE|2025-07-03
Submitting group
Date submitted
2025-10-17 08:11:57 UTC
Date released
2025-10-17 08:42:57 UTC
Earliest release date
2025-08-17

Alignment and QC

Length
186526 (25%)
# of SNPs
22
# of unknown bases
137163

Nucleotide mutations

Mutations called relative to the NC_063383.1 reference

Substitutions
  • C6105T
  • C6555T
  • C10173T
  • C13298T
  • G20913A
  • C21359T
  • G23118A
  • G28139A
  • T28175C
  • C34472T
  • C34578T
  • C63695T
  • G77383A
  • G80099A
  • G91499A
  • G93312A
  • G149265A
  • C149365T
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_063383.1 reference

Substitutions

OPG015

  • OPG015:D18N

OPG021

  • OPG021:S196L

OPG036

  • OPG036:S51F

OPG037

  • OPG037:V359I

OPG044

  • OPG044:D17N

OPG053

  • OPG053:G38E

OPG083

  • OPG083:R341K

OPG098

  • OPG098:E162K

OPG112

  • OPG112:E85K

OPG113

  • OPG113:V528I

OPG174

  • OPG174:G11R
  • OPG174:S44L

OPG188

  • OPG188:H120Y
Deletions
N/A
Insertions
N/A

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