PP_00339YK.3

USA/PP_00339YK.3/2023-09-13
Shawn Freed Jr, Sarah Chandler, Sarah Uhm, Dikchha Gurung, Ava Butz, Kaylee Herzog & Joseph R. Fauver

University of Nebraska Medical Center

Sample details

Collection date
2023-09-13
Sampling location
USA (Adams, Nebraska)

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-08-20 01:57josephfauverOPEN
2025-08-14 03:45josephfauverRESTRICTED until 2026-08-13
Data use terms URL

Lineage

Lineage
1A

INSDC

INSDC accession
BioProject accession
BioSample accession
GCA accession

Host

Host

Sequencing

Sequencing instrument
Illumina NovaSeq
Sequencing protocol
IDT xGen WNV

Submission details

Submission ID
UNMC0729
Submitting group
Date submitted
2025-08-20 02:00:01 UTC
Date released
2025-08-20 02:01:04 UTC
Earliest release date
2025-08-14

Alignment and QC

Length
10169 (89.1%)
# of SNPs
105
# of deleted bases
1
# of unknown bases
341
# of frame shifts
1
Frame shifts
NS5:206-905(nt:8294-10395)

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • C282T
  • A288G
  • C340T
  • G430A
  • C435T
  • C522T
  • T528C
  • C624T
  • A630G
  • G741A
  • C816T
  • T891C
  • T928C
  • T1149C
  • T1368C
  • T1442C
  • C1465T
  • T1563C
Deletions

8293
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_009942.1 reference

Substitutions

NS1

  • NS1:T108M

NS2A

  • NS2A:R188K

NS4B

  • NS4B:I240M

capsid

  • capsid:A112T

env

  • env:V159A
  • env:L167F

prM

  • prM:F155L
Deletions

NS5

NS5:205
Insertions
N/A

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