PP_00339HF.2

Display Name: USA/PP_00339HF.2/2023-08-29
Shawn Freed Jr, Sarah Chandler, Sarah Uhm, Dikchha Gurung, Ava Butz, Kaylee Herzog & Joseph R. Fauver

Sample details

Collection date
2023-08-29
Country
USA
Admin level 1
Nebrsaka
Admin level 2
Scotts Bluff

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-08-20 01:57josephfauverOPEN
2025-08-14 03:45josephfauverRESTRICTED until 2026-08-13
Data use terms URL

Lineage

Lineage
1A

Authors

Author affiliations
University of Nebraska Medical Center

Host

Host name - scientific
Culex pipiens/restuans/salinarius

Sequencing

Sequencing instrument
Illumina NovaSeq
Sequencing protocol
IDT xGen WNV

Alignment and QC metrics

Length
10262
Completeness
93.05%
# of SNPs
102
# of inserted bases
0
# of deleted bases
0
# of ambiguous bases
0
# of unknown bases
0
# of frame shifts
0
# of stop codons
0

Submission details

Submission ID
UNMC0709
Submitting group
Date submitted
2025-08-20 01:54:50 UTC
Date released
2025-08-20 01:56:35 UTC
Earliest release date
2025-08-14

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • C340T
  • C423T
  • C435T
  • T516A
  • A525G
  • T629C
  • A630G
  • C1329T
  • T1442C
  • C1465T
  • C1470T
  • G1662A
  • C1707T
  • C1750T
  • C2109T
  • C2304T
  • C2323T
  • C2466T
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_009942.1 reference

    Substitutions

    NS1

  • NS1:G233S

    • NS2A

  • NS2A:L38M
  • NS2A:L126F
  • NS2A:R188K

    • NS3

  • NS3:P249S

    • NS4B

  • NS4B:I240M

    • env

  • env:V159A
  • env:L167F

    • prM

  • prM:V55A
    • Deletions
    None
    Insertions
    None

    Report an issue with this sequence or metadata

    Create GitHub issue