PP_00339EN.2

Display Name: USA/PP_00339EN.2/2023-08-23
Shawn Freed Jr, Sarah Chandler, Sarah Uhm, Dikchha Gurung, Ava Butz, Kaylee Herzog & Joseph R. Fauver

Sample details

Collection date
2023-08-23
Country
USA
Admin level 1
Nebrsaka
Admin level 2
Lincoln

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-08-20 01:57josephfauverOPEN
2025-08-14 03:45josephfauverRESTRICTED until 2026-08-13
Data use terms URL

Lineage

Lineage
1A

Authors

Author affiliations
University of Nebraska Medical Center

Host

Host name - scientific
Culex tarsalis

Sequencing

Sequencing instrument
Illumina NovaSeq
Sequencing protocol
IDT xGen WNV

Alignment and QC metrics

Length
10260
Completeness
93.03%
# of SNPs
124
# of inserted bases
0
# of deleted bases
0
# of ambiguous bases
0
# of unknown bases
0
# of frame shifts
0
# of stop codons
0

Submission details

Submission ID
UNMC0706
Submitting group
Date submitted
2025-08-20 01:54:50 UTC
Date released
2025-08-20 01:56:35 UTC
Earliest release date
2025-08-14

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • C315T
  • T348C
  • C423T
  • C519T
  • A580T
  • T609C
  • A630G
  • C783T
  • C807T
  • T960C
  • C972T
  • C990T
  • G1365A
  • A1401G
  • T1442C
  • C1465T
  • C1560T
  • A1674G
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_009942.1 reference

    Substitutions

    NS2A

  • NS2A:T52I
  • NS2A:L95F
  • NS2A:L212F

    • NS3

  • NS3:S334T

    • NS4A

  • NS4A:V89A

    • NS4B

  • NS4B:S14I
  • NS4B:V23A

    • NS5

  • NS5:G175R

    • env

  • env:V159A
  • env:L167F
  • env:F311I
  • env:L412F

    • prM

  • prM:M39L
    • Deletions
    None
    Insertions
    None

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