PP_00338YL.1

Display Name: USA/PP_00338YL.1/2023-08-17
Shawn Freed Jr, Sarah Chandler, Sarah Uhm, Dikchha Gurung, Ava Butz, Kaylee Herzog & Joseph R. Fauver

Sample details

Collection date
2023-08-17
Country
USA
Admin level 1
Nebrsaka
Admin level 2
Lancaster

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-08-20 01:57josephfauverOPEN
2025-08-14 03:45josephfauverRESTRICTED until 2026-08-13
Data use terms URL

Lineage

Lineage
1A

Authors

Author affiliations
University of Nebraska Medical Center

Host

Host name - scientific
Culex tarsalis

Sequencing

Sequencing instrument
Illumina NovaSeq
Sequencing protocol
IDT xGen WNV

Alignment and QC metrics

Length
10260
Completeness
93.03%
# of SNPs
108
# of inserted bases
0
# of deleted bases
0
# of ambiguous bases
0
# of unknown bases
0
# of frame shifts
0
# of stop codons
0

Submission details

Submission ID
UNMC0690
Submitting group
Date submitted
2025-08-14 03:45:22 UTC
Date released
2025-08-14 03:46:21 UTC
Earliest release date
2025-08-14

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • C340T
  • A360C
  • C366T
  • C372T
  • C435T
  • C450T
  • T458C
  • G504A
  • T606C
  • A630G
  • G741A
  • G780A
  • T826C
  • T928C
  • T978C
  • C1275T
  • T1442C
  • C1465T
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_009942.1 reference

    Substitutions

    NS1

  • NS1:V245I

    • NS2A

  • NS2A:R188K

    • NS4B

  • NS4B:I240M

    • capsid

  • capsid:V121A

    • env

  • env:V159A
  • env:L167F
  • env:T231A

    • prM

  • prM:F155L
    • Deletions
    None
    Insertions
    None

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