PP_00337JF.3

Display Name: USA/PP_00337JF.3/2023-08-11
Shawn Freed Jr, Sarah Chandler, Sarah Uhm, Dikchha Gurung, Ava Butz, Kaylee Herzog & Joseph R. Fauver

Sample details

Collection date
2023-08-11
Country
USA
Admin level 1
Nebraska
Admin level 2
Scotts Bluff

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-08-20 01:57josephfauverOPEN
2025-08-14 03:45josephfauverRESTRICTED until 2026-08-13
Data use terms URL

Lineage

Lineage
1A

Authors

Author affiliations
University of Nebraska Medical Center

INSDC

INSDC accession
BioProject accession
BioSample accession
GCA accession

Host

Host name - scientific
Culex tarsalis

Sequencing

Sequencing instrument
Illumina NovaSeq
Sequencing protocol
IDT xGen WNV

Alignment and QC metrics

Length
10261
Completeness
93.04%
# of SNPs
115
# of inserted bases
0
# of deleted bases
0
# of ambiguous bases
0
# of unknown bases
0
# of frame shifts
0
# of stop codons
0

Submission details

Submission ID
UNMC0557
Submitting group
Date submitted
2025-08-20 02:00:01 UTC
Date released
2025-08-20 02:01:04 UTC
Earliest release date
2025-08-14

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • A418G
  • T592C
  • A630G
  • C687T
  • C885T
  • A939G
  • G1059A
  • T1155C
  • C1170T
  • A1401G
  • T1410G
  • T1442C
  • C1465T
  • G1887A
  • T1965C
  • A2097T
  • C2371T
  • C2466T
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_009942.1 reference

    Substitutions

    NS2A

  • NS2A:T52I
  • NS2A:L95F

    • NS2B

  • NS2B:I107V

    • NS3

  • NS3:E182D
  • NS3:S334A

    • NS4B

  • NS4B:S14I
  • NS4B:I21V

    • NS5

  • NS5:M19L
  • NS5:D312E

    • capsid

  • capsid:K108E

    • env

  • env:V159A
  • env:L167F

    • prM

  • prM:Y43H
    • Deletions
    None
    Insertions
    None

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