PP_00337FN.3

Display Name: USA/PP_00337FN.3/2023-08-11
Shawn Freed Jr, Sarah Chandler, Sarah Uhm, Dikchha Gurung, Ava Butz, Kaylee Herzog & Joseph R. Fauver

Sample details

Collection date
2023-08-11
Country
USA
Admin level 1
Nebraska
Admin level 2
Hall

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-08-20 01:57josephfauverOPEN
2025-08-14 03:45josephfauverRESTRICTED until 2026-08-13
Data use terms URL

Lineage

Lineage
1A

Authors

Author affiliations
University of Nebraska Medical Center

INSDC

INSDC accession
BioProject accession
BioSample accession
GCA accession

Host

Host name - scientific
Culex pipiens/restuans/salinarius

Sequencing

Sequencing instrument
Illumina NovaSeq
Sequencing protocol
IDT xGen WNV

Alignment and QC metrics

Length
10260
Completeness
93.03%
# of SNPs
105
# of inserted bases
0
# of deleted bases
0
# of ambiguous bases
0
# of unknown bases
0
# of frame shifts
0
# of stop codons
0

Submission details

Submission ID
UNMC0554
Submitting group
Date submitted
2025-08-20 02:00:01 UTC
Date released
2025-08-20 02:01:04 UTC
Earliest release date
2025-08-14

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • C216T
  • C381T
  • C472T
  • T477C
  • A630G
  • C870T
  • C1308T
  • T1368C
  • A1401G
  • T1442C
  • C1465T
  • T1800C
  • T1965C
  • A2097C
  • C2371T
  • C2466T
  • C2593T
  • T3138C
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_009942.1 reference

    Substitutions

    NS2A

  • NS2A:T52I
  • NS2A:L95F
  • NS2A:H119Y

    • NS2B

  • NS2B:V119I

    • NS3

  • NS3:S334T

    • NS4B

  • NS4B:S14I

    • NS5

  • NS5:T25A
  • NS5:R422K

    • env

  • env:V159A
  • env:L167F

    • prM

  • prM:L3F
    • Deletions
    None
    Insertions
    None

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