PP_00332CZ.3

Display Name: USA/PP_00332CZ.3/2022-09-12
Shawn Freed Jr, Sarah Chandler, Sarah Uhm, Dikchha Gurung, Ava Butz, Kaylee Herzog & Joseph R. Fauver

Sample details

Collection date
2022-09-12
Country
USA
Admin level 1
Nebraska
Admin level 2
Adams

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-08-20 01:57josephfauverOPEN
2025-08-14 03:45josephfauverRESTRICTED until 2026-08-13
Data use terms URL

Lineage

Lineage
1A

Authors

Author affiliations
University of Nebraska Medical Center

INSDC

INSDC accession
BioProject accession
BioSample accession
GCA accession

Host

Host name - scientific
Culex

Sequencing

Sequencing instrument
Illumina MiniSeq
Sequencing protocol
IDT xGen WNV

Alignment and QC metrics

Length
10260
Completeness
93.03%
# of SNPs
109
# of inserted bases
0
# of deleted bases
0
# of ambiguous bases
0
# of unknown bases
0
# of frame shifts
0
# of stop codons
0

Submission details

Submission ID
UNMC0015
Submitting group
Date submitted
2025-08-20 02:00:01 UTC
Date released
2025-08-20 02:01:04 UTC
Earliest release date
2025-08-14

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • C340T
  • T375C
  • C422T
  • C423T
  • C435T
  • C450T
  • T477C
  • T592C
  • A630G
  • C870T
  • C906T
  • C1329T
  • T1368C
  • T1442C
  • C1465T
  • C1470T
  • C1620T
  • T1656C
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_009942.1 reference

    Substitutions

    NS1

  • NS1:G233S

    • NS2A

  • NS2A:L38M
  • NS2A:R188K

    • NS2B

  • NS2B:V75I

    • NS4B

  • NS4B:I240M

    • NS5

  • NS5:T897A

    • capsid

  • capsid:T109I

    • env

  • env:V159A
  • env:L167F

    • prM

  • prM:Y43H
    • Deletions
    None
    Insertions
    None

    Report an issue with this sequence or metadata

    Create GitHub issue