PP_003321M.3

Display Name: USA/PP_003321M.3/2023-06-26
Shawn Freed Jr, Sarah Chandler, Sarah Uhm, Dikchha Gurung, Ava Butz, Kaylee Herzog & Joseph R. Fauver

Sample details

Collection date
2023-06-26
Country
USA
Admin level 1
Nebraska
Admin level 2
Red Willow

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-08-20 01:57josephfauverOPEN
2025-08-14 03:45josephfauverRESTRICTED until 2026-08-13
Data use terms URL

Lineage

Lineage
1A

Authors

Author affiliations
University of Nebraska Medical Center

INSDC

INSDC accession
BioProject accession
BioSample accession
GCA accession

Host

Host name - scientific
Culex tarsalis

Sequencing

Sequencing instrument
Illumina MiniSeq
Sequencing protocol
IDT xGen WNV

Alignment and QC metrics

Length
10260
Completeness
93.03%
# of SNPs
91
# of inserted bases
0
# of deleted bases
0
# of ambiguous bases
0
# of unknown bases
0
# of frame shifts
0
# of stop codons
0

Submission details

Submission ID
UNMC0004
Submitting group
Date submitted
2025-08-20 02:00:01 UTC
Date released
2025-08-20 02:01:04 UTC
Earliest release date
2025-08-14

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • A202G
  • G222A
  • G237A
  • T348C
  • C435T
  • A507G
  • T570C
  • A630G
  • C1053T
  • T1083A
  • G1117A
  • A1341T
  • C1356T
  • T1442C
  • C1465T
  • C1560T
  • C1953T
  • C2007T
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_009942.1 reference

    Substitutions

    NS2A

  • NS2A:I37T

    • NS3

  • NS3:E180D
  • NS3:I435L

    • NS4B

  • NS4B:L183I
  • NS4B:I240M

    • NS5

  • NS5:C139S

    • capsid

  • capsid:S36G

    • env

  • env:A51T
  • env:V159A
  • env:L167F
    • Deletions
    None
    Insertions
    None

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