PP_003227B.2

Display Name: France/PP_003227B.2/2024
M. Gasparine & A. Falchi

Sample details

Collection date
2024
Country
France
Isolate name
590

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-08-11 16:43insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
University of Corsica, Unite des Virus Emergents

INSDC

INSDC accession M
INSDC accession S
NCBI release date
2025-08-10

Host

Host taxon ID
Host name - scientific
Ixodoidea

Alignment and QC metrics S

Length S
1673
Completeness S
100.00%
# of SNPs S
127
# of inserted bases S
1
# of deleted bases S
0
# of ambiguous bases S
0
# of unknown bases S
0
# of frame shifts S
0
# of stop codons S
0

Alignment and QC metrics M

Length M
5206
Completeness M
36.75%
# of SNPs M
640
# of inserted bases M
98
# of deleted bases M
55
# of ambiguous bases M
0
# of unknown bases M
3191
# of frame shifts M
7
# of stop codons M
0
Frame shifts M
GPC:18-74(nt:144-314),GPC:95-122(nt:374-456),GPC:318-326(nt:1043-1070),GPC:352-524(nt:1146-1664),GPC:543-560(nt:1718-1771),GPC:1084-1148(nt:3340-3535),GPC:1162-1685(nt:3574-5147)

Submission details

Submission ID
PV976884.1.M/PV976887.1.S
Submitting group
Date submitted
2025-09-24 17:35:10 UTC
Date released
2025-09-24 18:29:12 UTC
Earliest release date
2025-08-10

Lineage

Segment S Lineage
III

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

M

  • M:G50T
  • M:A51G
  • M:A52T
  • M:G53A
  • M:G56T
  • M:A57G
  • M:T58A
  • M:T59A
  • M:G60A
  • M:A64G
  • M:T65A
  • M:C66T
  • M:A69G
  • M:A70T
  • M:T71G
  • M:T72A
  • M:C74G
  • M:G76A

    • S

  • S:G20T
  • S:A50G
  • S:G54A
  • S:G67A
  • S:G99A
  • S:A124G
  • S:C166T
  • S:C178A
  • S:G189A
  • S:T199C
  • S:G202A
  • S:A209G
  • S:C235T
  • S:C241T
  • S:C244T
  • S:A247G
  • S:G271A
  • S:C295T
    • Deletions
    M:315, M:316, M:346-373, M:1029-1042, M:1144, M:1145, M:1515, M:1665, M:1716, M:1717, M:1772, M:3536, M:3537, M:3573, M:3674
    Insertions
    ins_M:143:GCGGGGTTGCCAGT, ins_M:456:GCTCCAGGTGCATCCACTCCAAGCAACACCACATCAAACAAACCAGATGTCAACTCATTCACAT, ins_M:1070:AC, ins_M:1295:A, ins_M:3339:G, ins_M:3383:T, ins_M:5084:TTGATG, ins_M:5108:G, ins_M:5145:GACGAATC, ins_S:1577:A

    Amino acid mutations

    Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

    Substitutions

    GPC

  • GPC:M1K
  • GPC:H2F
  • GPC:I3M
  • GPC:S4L
  • GPC:M6T
  • GPC:Y7N
  • GPC:A8F
  • GPC:I9F
  • GPC:L10F
  • GPC:L12Q
  • GPC:Q13L
  • GPC:L14Y
  • GPC:C15G
  • GPC:G16V
  • GPC:L17A
  • GPC:P80I
  • GPC:P81S
  • GPC:I82T

    • NP

  • NP:R15K
  • NP:R45K
  • NP:S52G
  • NP:K91R
  • NP:T124A
  • NP:G125N
  • NP:L179Q
  • NP:H195R
  • NP:S301G
  • NP:K428R
  • NP:V436I
    • Deletions
    GPC:75, GPC:86-94, GPC:313-317, GPC:327, GPC:328, GPC:525, GPC:528, GPC:542, GPC:1149, GPC:1161
    Insertions
    ins_GPC:131:DVNSFTSPILEAKSSP, ins_GPC:1157:EEWX

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