PP_002S5GA.2

Display Name: USA/PP_002S5GA.2/2014-12-20
V. Avadhanula, D. P. Agustinho, V. K. Menon, R. F. Chemaly, D. P. Shah, X. Qin, A. Surathu, H. Doddapaneni, D. M. Muzny, G. A. Metcalf, S. J. Gregeen, R. A. Gibbs, J. J. Petrosino, F. J. Sedlazeck & P. A. Piedra

Sample details

Collection date
2014-12-20
Country
USA
Isolate name
p1306-121310759A

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-05-22 14:46insdc_ingest_userOPEN
Data use terms URL

Lineage

Lineage
B.D.4

Authors

Author affiliations
Baylor College of Medicine, Human Genome Sequencing Center

INSDC

INSDC accession
BioProject accession
BioSample accession
NCBI release date
2023-10-01
NCBI update date
2025-08-04
Raw reads accession

Host

Host taxon ID
Host name - scientific
Homo sapiens

Alignment and QC metrics

Length
15206
Completeness
99.73%
# of SNPs
135
# of inserted bases
25
# of deleted bases
0
# of ambiguous bases
0
# of unknown bases
0
# of frame shifts
0
# of stop codons
0

Submission details

Submission ID
OR466382.1
Submitting group
Date submitted
2025-08-04 22:33:26 UTC
Date released
2025-08-04 22:33:52 UTC
Earliest release date
2023-10-01

Nucleotide mutations

Mutations called relative to the OP975389.1 reference

Substitutions

  • G1A
  • C3G
  • G36A
  • A119G
  • G513T
  • G579A
  • C829T
  • C974T
  • C994T
  • C1001T
  • A1116G
  • G1385A
  • T1621C
  • C1804T
  • T1846C
  • C1957T
  • C2198T
  • T2529C
    • Deletions
    None
    Insertions
    ins_0:CTACAAACTTGCACACTCGAAAAAA

    Amino acid mutations

    Mutations called relative to the OP975389.1 reference

    Substitutions

    F

  • F:L173S
  • F:R191K
  • F:N201S
  • F:M206I
  • F:R209K

    • G

  • G:A74V
  • G:H82R
  • G:A107T
  • G:T131A
  • G:T136R
  • G:I137T
  • G:N143K
  • G:P205L
  • G:I252T
  • G:I288T
  • G:I310T

    • L

  • L:V715I
  • L:A1479V
  • L:V1533F
  • L:A1712T
  • L:V1716I
  • L:S1953N
  • L:T1987I

    • M2-1

  • M2-1:S182N

    • M2-2

  • M2-2:I2T

    • N

  • N:K7R
  • N:V97I

    • SH

  • SH:D64N
    • Deletions
    None
    Insertions
    None

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