PP_002LCN2.2

Display Name: Australia/PP_002LCN2.2/2016-12-16
M. Robertson, J.-S. Eden, A. Levy, I. Carter, R. L. Tulloch, E. J. Cutmore, B. A. Horsburgh, C. T. Sikazwe, D. E. Dwyer, D. W. Smith & J. Kok

Sample details

Collection date
2016-12-16
Country
Australia
Isolate name
B/WA/PW7817624N/2016

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-05-22 14:46insdc_ingest_userOPEN
Data use terms URL

Lineage

Lineage
B.D.4.1

Authors

Author affiliations
The University of Sydney, Marie Bashir Institute for Infectious Diseases and Biosecurity & Sydney Medical School

INSDC

INSDC accession
NCBI release date
2021-03-24
NCBI update date
2021-03-24

Host

Host taxon ID
Host name - scientific
Homo sapiens

Alignment and QC metrics

Length
15217
Completeness
99.86%
# of SNPs
104
# of inserted bases
17
# of deleted bases
0
# of ambiguous bases
0
# of unknown bases
0
# of frame shifts
0
# of stop codons
0

Submission details

Submission ID
MW160794.1
Submitting group
Date submitted
2025-12-22 00:55:38 UTC
Date released
2025-12-22 01:03:13 UTC
Earliest release date
2021-03-24

Nucleotide mutations

Mutations called relative to the OP975389.1 reference

Substitutions

  • G1A
  • C3G
  • T161C
  • A290T
  • G513T
  • G579A
  • A1282G
  • A1378G
  • G1385A
  • C1771T
  • T1846C
  • C2198T
  • T2529C
  • C2679T
  • C2886T
  • C3067T
  • C3082T
  • C3146T
    • Deletions
    None
    Insertions
    ins_0:TTGCACACTCGAAAAAA

    Amino acid mutations

    Mutations called relative to the OP975389.1 reference

    Substitutions

    F

  • F:K68E
  • F:R191K
  • F:M206I
  • F:R209Q

    • G

  • G:A74V
  • G:T126A
  • G:T131A
  • G:I137T
  • G:T225N
  • G:D251N
  • G:K256N
  • G:A269V
  • G:I288T
  • G:I310T

    • L

  • L:K960N
  • L:A1479V
  • L:V1716I
  • L:T1987I

    • M2-2

  • M2-2:I2T
  • M2-2:S26N
  • M2-2:H43Y
  • M2-2:C49Y

    • N

  • N:V97I

    • SH

  • SH:D64N
    • Deletions
    None
    Insertions
    None

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