PP_00286QV.1

Display Name: Viet_Nam/PP_00286QV.1/2014-09-18
L. Lu, G. Robertson, J. Ashworth, A. Pham Hong, T. Shi, A. Ivens, G. Thwaites, S. Baker & M. Woolhouse

Sample details

Collection date
2014-09-18
Country
Viet Nam

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-05-22 14:45insdc_ingest_userOPEN
Data use terms URL

Lineage

Lineage
B.D.4

Authors

Author affiliations
University of Edinburgh, Centre for Immunity, Infection and Evolution

INSDC

INSDC accession
NCBI release date
2022-04-16
NCBI update date
2022-04-16

Host

Host taxon ID
Host name - scientific
Homo sapiens

Alignment and QC metrics

Length
15228
Completeness
99.93%
# of SNPs
139
# of inserted bases
17
# of deleted bases
0
# of ambiguous bases
0
# of unknown bases
0
# of frame shifts
0
# of stop codons
0

Submission details

Submission ID
MH828510.1
Submitting group
Date submitted
2025-05-22 14:43:46 UTC
Date released
2025-05-22 14:51:33 UTC
Earliest release date
2022-04-16

Nucleotide mutations

Mutations called relative to the OP975389.1 reference

Substitutions

  • G1A
  • C3G
  • A399G
  • G458A
  • G513T
  • A517G
  • G579A
  • C607T
  • G732A
  • T760C
  • C829T
  • C994T
  • C1001T
  • G1385A
  • T1621C
  • C1804T
  • T1846C
  • C2198T
    • Deletions
    None
    Insertions
    ins_0:TTGCACACTCGAAAAAA

    Amino acid mutations

    Mutations called relative to the OP975389.1 reference

    Substitutions

    F

  • F:L173S
  • F:R191K
  • F:N201S
  • F:M206I
  • F:R209K

    • G

  • G:A74V
  • G:A107T
  • G:A116V
  • G:T131A
  • G:T136R
  • G:I137T
  • G:R151H
  • G:P214S
  • G:I252T
  • G:A269V
  • G:I288T
  • G:I310P

    • L

  • L:V715I
  • L:A1479V
  • L:A1712T
  • L:V1716I
  • L:L1838S
  • L:T1987I

    • M2-1

  • M2-1:S182N

    • M2-2

  • M2-2:I2T

    • N

  • N:V97I

    • NS1

  • NS1:K115E

    • NS2

  • NS2:R50K

    • SH

  • SH:D64N
    • Deletions
    None
    Insertions
    None

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