PP_00286PX.2

Viet_Nam/PP_00286PX.2/2014-09-22
L. Lu, G. Robertson, J. Ashworth, A. Pham Hong, T. Shi, A. Ivens, G. Thwaites, S. Baker & M. Woolhouse

University of Edinburgh, Centre for Immunity, Infection and Evolution

Sample details

Collection date
2014-09-22
Sampling location
Viet Nam
Isolate name
RSVB/Vietnam/vzrsvb7/2014

Data use terms

Data use terms
OPEN
Data use terms URL

Lineage

Lineage
B.D.4

INSDC

INSDC accession
NCBI release date
2022-04-16
NCBI update date
2022-04-16

Host

Host

Submission details

Submission ID
MH828509.1
Submitting group
Date submitted
2025-12-20 08:28:44 UTC
Date released
2025-12-20 08:36:44 UTC
Earliest release date
2022-04-16

Alignment and QC

Length
15228 (99.9%)
# of SNPs
138
# of inserted bases
17
# of ambiguous bases
9

Nucleotide mutations

Mutations called relative to the OP975389.1 reference

Substitutions
  • G1A
  • C3G
  • T470C
  • G513T
  • G545A
  • G579A
  • C829T
  • C994T
  • C1001T
  • G1385A
  • T1621C
  • C1804T
  • T1846C
  • A1891G
  • C1957T
  • C2198T
  • T2529C
  • C2679T
Deletions
N/A
Insertions
ins_0:TTGCACACTCGAAAAAA

Amino acid substitutions

Substitutions called relative to the OP975389.1 reference

Substitutions

F

  • F:L173S
  • F:R191K
  • F:N201S
  • F:M206I
  • F:R209K
  • F:I402V

G

  • G:A74V
  • G:A107T
  • G:T131A
  • G:T136R
  • G:I137T
  • G:K236N
  • G:I252T
  • G:I288T
  • G:I310T

L

  • L:V715I
  • L:H1370N
  • L:A1479V
  • L:A1712T
  • L:V1716I
  • L:T1987I

M2-1

  • M2-1:S182N

M2-2

  • M2-2:I2T

N

  • N:V97I

SH

  • SH:D64N
Deletions
N/A
Insertions
N/A

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