PP_00285GD.2

Display Name: Australia/PP_00285GD.2/2016-08-16
F. Di Giallonardo, J. Kok, M. Fernandez, I. Carter, J. L. Geoghegan, D. E. Dwyer, E. C. Holmes, J. S. Eden & J.-S. Eden

Sample details

Collection date
2016-08-16
Country
Australia
Isolate name
B/NSW/WM0338A/16

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-05-22 14:45insdc_ingest_userOPEN
Data use terms URL

Lineage

Lineage
B.D.4

Authors

Author affiliations
The University of Sydney, Marie Bashir Institute for Infectious Diseases and Biosecurity & Sydney Medical School

INSDC

INSDC accession
NCBI release date
2018-09-25
NCBI update date
2018-09-25

Host

Host taxon ID
Host name - scientific
Homo sapiens

Alignment and QC metrics

Length
14962
Completeness
98.29%
# of SNPs
155
# of inserted bases
0
# of deleted bases
0
# of ambiguous bases
0
# of unknown bases
0
# of frame shifts
0
# of stop codons
0

Submission details

Submission ID
MH760697.1
Submitting group
Date submitted
2025-12-22 16:27:17 UTC
Date released
2025-12-22 16:35:20 UTC
Earliest release date
2018-09-25

Nucleotide mutations

Mutations called relative to the OP975389.1 reference

Substitutions

  • A359G
  • A497G
  • G513T
  • C570T
  • G579A
  • T592C
  • C671T
  • C685T
  • C829T
  • C984T
  • C994T
  • C1001T
  • G1385A
  • T1621C
  • C1804T
  • T1846C
  • C1957T
  • C2198T
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the OP975389.1 reference

    Substitutions

    F

  • F:A16V
  • F:L173S
  • F:R191K
  • F:N201S
  • F:M206I
  • F:R209K
  • F:V278A

    • G

  • G:A74V
  • G:I87T
  • G:A107T
  • G:T131A
  • G:T136R
  • G:I137T
  • G:S138T
  • G:N143K
  • G:I252T
  • G:I288T
  • G:S295F
  • G:I310T

    • L

  • L:V715I
  • L:A1479V
  • L:V1533F
  • L:A1712T
  • L:V1716I
  • L:T1987I

    • M2-1

  • M2-1:S182N

    • M2-2

  • M2-2:I2T

    • N

  • N:V97I

    • NS2

  • NS2:L30F

    • P

  • P:E179G

    • SH

  • SH:D64N
    • Deletions
    None
    Insertions
    None

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