PP_002850B.2

Display Name: Australia/PP_002850B.2/2016-10-21
F. Di Giallonardo, J. Kok, M. Fernandez, I. Carter, J. L. Geoghegan, D. E. Dwyer, E. C. Holmes, J. S. Eden & J.-S. Eden

Sample details

Collection date
2016-10-21
Country
Australia
Isolate name
B/NSW/WM1393A/16

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-05-22 14:45insdc_ingest_userOPEN
Data use terms URL

Lineage

Lineage
B.D.4.1

Authors

Author affiliations
The University of Sydney, Marie Bashir Institute for Infectious Diseases and Biosecurity & Sydney Medical School

INSDC

INSDC accession
NCBI release date
2018-09-25
NCBI update date
2018-09-25

Host

Host taxon ID
Host name - scientific
Homo sapiens

Alignment and QC metrics

Length
14961
Completeness
98.29%
# of SNPs
72
# of inserted bases
0
# of deleted bases
1
# of ambiguous bases
0
# of unknown bases
0
# of frame shifts
0
# of stop codons
0

Submission details

Submission ID
MH760681.1
Submitting group
Date submitted
2025-12-22 16:27:17 UTC
Date released
2025-12-22 16:35:20 UTC
Earliest release date
2018-09-25

Nucleotide mutations

Mutations called relative to the OP975389.1 reference

Substitutions

  • G507T
  • G513T
  • G579A
  • C644T
  • T935C
  • G944A
  • G1385A
  • T1846C
  • C2198T
  • T2328C
  • C3067T
  • C3082T
  • C3146T
  • C3180T
  • C3720T
  • C3726A
  • A3735G
  • C4048A
    • Deletions
    4586
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the OP975389.1 reference

    Substitutions

    F

  • F:K65Q
  • F:R191K
  • F:M206I
  • F:R209Q
  • F:I527T
  • F:I535T

    • G

  • G:A74V
  • G:S124P
  • G:T131A
  • G:I137T
  • G:N202T
  • G:P221T
  • G:L284P
  • G:I288T
  • G:I310T

    • L

  • L:A1479V
  • L:T1987I

    • M2-2

  • M2-2:I2T

    • N

  • N:V97I

    • NS2

  • NS2:Y118H
  • NS2:D121N
    • Deletions
    None
    Insertions
    None

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