PP_0024XNG.2

New_Zealand/PP_0024XNG.2/2014-05-31
R. Shabman, S. R. Das, M. Shilts, N. Fedorova, V. Puri, S. Shrivastava, P. Amedeo, M. Williams, K. Barratt, J. Mitchell & L. Jennings

J. Craig Venter Institute

Sample details

Collection date
2014-05-31
Sampling location
New Zealand (Christchurch)
Isolate name
RSVB/Homo sapiens/NZL/LJRSV22/2014

Data use terms

Data use terms
OPEN
Data use terms URL

Lineage

Lineage
B.D.4

INSDC

INSDC accession
BioProject accession
NCBI release date
2016-10-01
NCBI update date
2016-10-01

Host

Host

Submission details

Submission ID
KX765895.1
Submitting group
Date submitted
2025-12-22 16:27:17 UTC
Date released
2025-12-22 16:35:20 UTC
Earliest release date
2016-10-01

Alignment and QC

Length
15232 (99.9%)
# of SNPs
131
# of inserted bases
21

Nucleotide mutations

Mutations called relative to the OP975389.1 reference

Substitutions
  • G1A
  • C3G
  • G513T
  • A539G
  • G579A
  • C673T
  • A809G
  • C829T
  • C883T
  • C994T
  • C1001T
  • T1033C
  • G1385A
  • T1621C
  • C1804T
  • C2198T
  • T2355C
  • T2406C
Deletions
N/A
Insertions
ins_0:AAACTTGCACACTCGAAAAAA

Amino acid substitutions

Substitutions called relative to the OP975389.1 reference

Substitutions

F

  • F:L173S
  • F:R191K
  • F:N201S
  • F:M206I
  • F:R209K

G

  • G:A74V
  • G:A107T
  • G:T131A
  • G:T136R
  • G:I137T
  • G:I227T
  • G:I252T
  • G:I268T
  • G:Y285H
  • G:I288T
  • G:I310T

L

  • L:V715I
  • L:A1479V
  • L:A1712T
  • L:V1716I
  • L:T1987I

M2-1

  • M2-1:S182N

M2-2

  • M2-2:I2T

N

  • N:V97I

NS2

  • NS2:T76A

SH

  • SH:D64N
Deletions
N/A
Insertions
N/A

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