PP_0024XLL.2

Display Name: New_Zealand/PP_0024XLL.2/2014-05-30
R. Shabman, S. R. Das, M. Shilts, N. Fedorova, V. Puri, S. Shrivastava, P. Amedeo, M. Williams, K. Barratt, J. Mitchell & L. Jennings

Sample details

Collection date
2014-05-30
Country
New Zealand
Admin level 1
Christchurch
Isolate name
RSVB/Homo sapiens/NZL/LJRSV21/2014

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-05-22 14:45insdc_ingest_userOPEN
Data use terms URL

Lineage

Lineage
B.D.4

Authors

Author affiliations
J. Craig Venter Institute

INSDC

INSDC accession
BioProject accession
NCBI release date
2016-10-01
NCBI update date
2016-10-01

Host

Host taxon ID
Host name - scientific
Homo sapiens

Alignment and QC metrics

Length
15233
Completeness
99.93%
# of SNPs
130
# of inserted bases
22
# of deleted bases
0
# of ambiguous bases
0
# of unknown bases
0
# of frame shifts
0
# of stop codons
0

Submission details

Submission ID
KX765892.1
Submitting group
Date submitted
2025-12-22 16:27:17 UTC
Date released
2025-12-22 16:35:20 UTC
Earliest release date
2016-10-01

Nucleotide mutations

Mutations called relative to the OP975389.1 reference

Substitutions

  • G1A
  • C3G
  • G513T
  • A539G
  • G579A
  • C673T
  • A809G
  • C829T
  • T835C
  • C883T
  • C994T
  • C1001T
  • T1033C
  • G1385A
  • T1621C
  • C1804T
  • C2198T
  • T2355C
    • Deletions
    None
    Insertions
    ins_0:AAACTTGCACACTCGAAAAAAA

    Amino acid mutations

    Mutations called relative to the OP975389.1 reference

    Substitutions

    F

  • F:L173S
  • F:R191K
  • F:N201S
  • F:M206I
  • F:R209K

    • G

  • G:A74V
  • G:A107T
  • G:T131A
  • G:T136R
  • G:I137T
  • G:I227T
  • G:I252T
  • G:I268T
  • G:Y285H
  • G:I288T
  • G:I310T

    • L

  • L:V715I
  • L:A1479V
  • L:I1588L
  • L:A1712T
  • L:V1716I
  • L:T1987I

    • M2-1

  • M2-1:S182N

    • M2-2

  • M2-2:I2T

    • N

  • N:V97I

    • NS2

  • NS2:T76A

    • SH

  • SH:D64N
    • Deletions
    None
    Insertions
    None

    Report an issue with this sequence or metadata

    Create GitHub issue