PP_002483A.1

Display Name: USA/PP_002483A.1/2013-12-06
S. R. Das, R. A. Halpin, M. Shilts, V. Puri, A. Akopov, N. Fedorova, T. Stockwell, P. Amedeo, B. Bishop, D. Katzel, S. Schobel, S. Shrivastava & T. Hartert

Sample details

Collection date
2013-12-06
Country
USA

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-05-22 14:45insdc_ingest_userOPEN
Data use terms URL

Lineage

Lineage
B.D.4

Authors

Author affiliations
J. Craig Venter Institute

INSDC

INSDC accession
BioProject accession
NCBI release date
2016-04-06
NCBI update date
2016-04-06

Host

Host taxon ID
Host name - scientific
Homo sapiens

Alignment and QC metrics

Length
15228
Completeness
99.93%
# of SNPs
127
# of inserted bases
17
# of deleted bases
0
# of ambiguous bases
0
# of unknown bases
0
# of frame shifts
0
# of stop codons
0

Submission details

Submission ID
KU950607.1
Submitting group
Date submitted
2025-05-22 14:43:46 UTC
Date released
2025-05-22 14:48:54 UTC
Earliest release date
2016-04-06

Nucleotide mutations

Mutations called relative to the OP975389.1 reference

Substitutions

  • G1A
  • C3G
  • G513T
  • G579A
  • C829T
  • C994T
  • C1001T
  • G1061A
  • C1247T
  • G1385A
  • T1621C
  • C1804T
  • T1846C
  • T2086A
  • C2198T
  • T2529C
  • C2679T
  • C2886T
    • Deletions
    None
    Insertions
    ins_0:TTGCACACTCGAAAAAA

    Amino acid mutations

    Mutations called relative to the OP975389.1 reference

    Substitutions

    F

  • F:T121A
  • F:L173S
  • F:R191K
  • F:N201S
  • F:M206I
  • F:R209K

    • G

  • G:A74V
  • G:A107T
  • G:T131A
  • G:T136R
  • G:I137T
  • G:P152L
  • G:I252T
  • G:Y285H
  • G:I288T
  • G:I310T

    • L

  • L:D366E
  • L:V715I
  • L:A1479V
  • L:A1712T
  • L:V1716I
  • L:K1788R
  • L:T1987I

    • M2-1

  • M2-1:S182N

    • M2-2

  • M2-2:I2T

    • N

  • N:V97I

    • SH

  • SH:D64N
    • Deletions
    None
    Insertions
    None

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