PP_0024484.2

USA/PP_0024484.2/2014-01-02
S. R. Das, R. A. Halpin, M. Shilts, V. Puri, A. Akopov, N. Fedorova, T. Stockwell, P. Amedeo, B. Bishop, D. Katzel, S. Schobel, S. Shrivastava, D. E. Wentworth & T. Hartert

J. Craig Venter Institute

Sample details

Collection date
2014-01-02
Sampling location
USA (Tennessee)
Isolate name
RSVB/Homo sapiens/USA/TH-40/2014

Data use terms

Data use terms
OPEN
Data use terms URL

Lineage

Lineage
B.D.4

INSDC

INSDC accession
BioProject accession
NCBI release date
2016-03-09
NCBI update date
2016-03-09

Host

Host

Submission details

Submission ID
KU839625.1
Submitting group
Date submitted
2025-12-22 16:27:17 UTC
Date released
2025-12-22 16:35:20 UTC
Earliest release date
2016-03-09

Alignment and QC

Length
15172 (99.7%)
# of SNPs
124

Nucleotide mutations

Mutations called relative to the OP975389.1 reference

Substitutions
  • G513T
  • G579A
  • C829T
  • C994T
  • C1001T
  • G1061A
  • C1247T
  • G1385A
  • T1621C
  • C1804T
  • T1846C
  • T2086A
  • C2198T
  • T2529C
  • C2679T
  • C2886T
  • A3045G
  • C3067T
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the OP975389.1 reference

Substitutions

F

  • F:T121A
  • F:L173S
  • F:R191K
  • F:N201S
  • F:M206I
  • F:R209K

G

  • G:A74V
  • G:A107T
  • G:T131A
  • G:T136R
  • G:I137T
  • G:P152L
  • G:I252T
  • G:Y285H
  • G:I288T
  • G:I310T

L

  • L:D366E
  • L:V715I
  • L:A1479V
  • L:A1712T
  • L:V1716I
  • L:K1788R
  • L:T1987I

M2-1

  • M2-1:S182N

M2-2

  • M2-2:I2T

N

  • N:V97I

SH

  • SH:D64N
Deletions
N/A
Insertions
N/A

Report an issue with this sequence or metadata

Create GitHub issue