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PP_0022ZSA.2
Version 2
PP_0022ZSA.1
Previous version
PP_0022ZSA.2
Latest version
All versions
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Display Name: PP_0022ZSA.2
T. Talts &
A. Bermingham
Sample details
Isolate name
N2
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2025-05-22 14:45
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://pathoplexus.org/about/terms-of-use/open-data
Lineage
Lineage
B
Authors
Author affiliations
Public Health England, Respiratory Virus Unit, Reference Microbiology Services
INSDC
INSDC accession
KF893260.1
NCBI release date
2014-02-24
NCBI update date
2014-02-24
Host
Host taxon ID
9606
Host name - scientific
Homo sapiens
Alignment and QC metrics
Length
15229
Completeness
100.00%
# of SNPs
542
# of inserted bases
67
# of deleted bases
60
# of ambiguous bases
0
# of unknown bases
0
# of frame shifts
0
# of stop codons
0
Submission details
Submission ID
KF893260.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-12-22 16:27:17 UTC
Date released
2025-12-22 16:35:20 UTC
Earliest release date
2014-02-24
Nucleotide mutations
Mutations called relative to the
OP975389.1
reference
Substitutions
G
1
A
C
3
G
C
28
T
T
48
C
G
104
A
T
110
C
A
189
G
A
278
G
T
311
C
A
338
G
A
371
G
C
468
A
G
513
T
C
535
A
A
549
G
C
556
T
C
570
T
A
576
G
Show more
Deletions
5399-5458
Insertions
ins_0:ACGCGAAAAAATGCGTACTACAAACTTGCACATTCGAAAAAA, ins_4034:A, ins_5119:CCAAGG, ins_7463:A, ins_7582:C, ins_15092:ATAT, ins_15222:TTTTTTTCTCGT
Amino acid mutations
Mutations called relative to the
OP975389.1
reference
Substitutions
F
F:
L
45
F
F:
K
65
T
F:
V
103
A
F:
Y
114
H
F:
Q
172
L
F:
L
173
S
F:
R
191
K
F:
M
206
I
F:
R
209
Q
F:
S
215
F
F:
R
508
K
F:
A
529
T
G
G:
N
4
H
G:
K
32
R
G:
A
74
V
G:
P
101
S
G:
K
103
I
G:
A
107
T
G:
P
109
S
G:
T
131
A
G:
T
136
R
G:
S
138
T
G:
P
140
S
G:
N
143
T
G:
K
149
E
G:
P
150
S
G:
P
152
S
G:
T
198
I
G:
P
205
T
G:
T
206
I
Show more
L
L:
S
8
N
L:
I
56
L
L:
Y
177
H
L:
N
184
T
L:
T
264
A
L:
V
308
I
L:
D
374
N
L:
V
715
I
L:
N
948
H
L:
T
973
M
L:
V
1043
I
L:
F
1054
L
L:
G
1250
S
L:
A
1479
V
L:
R
1547
K
L:
D
1700
N
L:
A
1712
T
L:
V
1716
M
Show more
M
M:
K
66
T
M:
T
89
I
M2-1
M2-1:
S
142
N
M2-1:
I
181
V
M2-1:
S
182
N
M2-2
M2-2:
I
2
T
M2-2:
I
28
V
M2-2:
D
35
N
N
N:
V
97
I
N:
Y
216
H
N:
T
372
A
NS1
NS1:
T
45
A
NS1:
I
105
M
NS1:
H
138
N
NS2
NS2:
D
24
E
P
P:
D
12
E
P:
T
66
I
P:
T
75
A
SH
SH:
K
48
N
SH:
I
49
T
SH:
Q
57
L
SH:
D
64
N
Deletions
G:252-271
Insertions
ins_G:158:PR
Nucleotide sequence
Aligned nucleotide sequence
Aligned amino acid sequences
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