PP_0022ZML.1

Display Name: Germany/PP_0022ZML.1/2008-02-01
H. Lorenzi, C. Town, R. Halpin, J. Bera, A. Ransier, N. Fedorova, T. Stockwell, P. Amedeo, L. Appalla, B. Bishop, P. Edworthy, N. Gupta, J. Hoover, D. Katzel, K. Li, S. Schobel, S. Shrivastava, V. Thovarai, S. Wang, C. Rebuffo-Scheer, J. Fan, J. He, S. C. Kehl, N. Lederboer, ..., K. J. Henrickson

Sample details

Collection date
2008-02-01
Country
Germany
Admin level 1
Freiburg

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-05-22 14:45insdc_ingest_userOPEN
Data use terms URL

Lineage

Lineage
B

Authors

Author affiliations
J. Craig Venter Institute

INSDC

INSDC accession
BioProject accession
NCBI release date
2013-11-25
NCBI update date
2014-03-03

Host

Host taxon ID
Host name - scientific
Homo sapiens

Alignment and QC metrics

Length
15183
Completeness
100.00%
# of SNPs
434
# of inserted bases
22
# of deleted bases
61
# of ambiguous bases
0
# of unknown bases
0
# of frame shifts
0
# of stop codons
0

Submission details

Submission ID
KF826853.2
Submitting group
Date submitted
2025-05-22 14:43:46 UTC
Date released
2025-05-22 14:48:23 UTC
Earliest release date
2013-11-25

Nucleotide mutations

Mutations called relative to the OP975389.1 reference

Substitutions

  • G1A
  • C3G
  • T48C
  • C72T
  • G104A
  • T110C
  • A338G
  • A371G
  • C389T
  • C468A
  • T471C
  • G505T
  • G513T
  • A517G
  • G579A
  • T620C
  • C739T
  • C767T
    • Deletions
    973, 5399-5458
    Insertions
    ins_0:AAAA, ins_5119:CCAAAA, ins_7581:A, ins_15222:TTTTTTTCTCG

    Amino acid mutations

    Mutations called relative to the OP975389.1 reference

    Substitutions

    F

  • F:L45F
  • F:K65Q
  • F:V103A
  • F:Y117H
  • F:Q172L
  • F:L173S
  • F:R191K
  • F:M206I
  • F:R209Q
  • F:I527M

    • G

  • G:N4D
  • G:A74V
  • G:T89S
  • G:T131A
  • G:T136R
  • G:I137T
  • G:S138T
  • G:T198V
  • G:L217P
  • G:T220P
  • G:P221L
  • G:T225N
  • G:I227T
  • G:K231R
  • G:P245S
  • G:Y285H
  • G:I288T
  • G:N291Y
  • G:I310T
  • G:*311Q

    • L

  • L:I56L
  • L:Y177H
  • L:C195Y
  • L:Y254H
  • L:I445V
  • L:V715I
  • L:N943S
  • L:P1032T
  • L:G1250S
  • L:A1479V
  • L:A1712T
  • L:V1716M
  • L:L1718S
  • L:G1735R
  • L:S1736N
  • L:I1780V
  • L:E1787A
  • L:K1844R

    • M2-1

  • M2-1:S142N
  • M2-1:I181V

    • M2-2

  • M2-2:I2T
  • M2-2:C49W

    • N

  • N:V97I
  • N:Y216H
  • N:T372A

    • NS1

  • NS1:I105M
  • NS1:H138N
  • NS1:S139P

    • P

  • P:N61T
  • P:I62V
  • P:A77T

    • SH

  • SH:G2V
  • SH:I49A
  • SH:D64N
  • SH:T65A
    • Deletions
    G:252-271
    Insertions
    ins_G:158:PK

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