PP_00223MG.1

Display Name: USA/PP_00223MG.1/2004-11
L. I. Tapia & P. A. Piedra

Sample details

Collection date
2004-11
Country
USA
Admin level 1
Texas, TX

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-05-22 14:45insdc_ingest_userOPEN
Data use terms URL

Lineage

Lineage
B.D

Authors

Author affiliations
Baylor College of Medicine, Molecular Virology and Microbiology

INSDC

INSDC accession
NCBI release date
2014-03-08
NCBI update date
2014-03-21

Host

Host taxon ID
Host name - scientific
Homo sapiens

Alignment and QC metrics

Length
3307
Completeness
21.69%
# of SNPs
97
# of inserted bases
6
# of deleted bases
0
# of ambiguous bases
0
# of unknown bases
0
# of frame shifts
0
# of stop codons
0

Submission details

Submission ID
JX198155.1
Submitting group
Date submitted
2025-05-22 14:43:46 UTC
Date released
2025-05-22 14:47:51 UTC
Earliest release date
2014-03-08

Nucleotide mutations

Mutations called relative to the OP975389.1 reference

Substitutions

  • A4106G
  • T4109C
  • A4166C
  • C4203T
  • C4233T
  • C4243T
  • T4245C
  • T4255C
  • T4404C
  • C4411T
  • G4448A
  • A4476G
  • C4483T
  • C4485T
  • C4490T
  • G4494A
  • C4495T
  • C4535T
    • Deletions
    None
    Insertions
    ins_5119:CCAAAA

    Amino acid mutations

    Mutations called relative to the OP975389.1 reference

    Substitutions

    F

  • F:S9I
  • F:L45F
  • F:K65T
  • F:V103A
  • F:Q172L
  • F:L173S
  • F:R191K
  • F:M206I
  • F:R209Q
  • F:T518V

    • G

  • G:A74V
  • G:A107T
  • G:T131A
  • G:T136R
  • G:I137T
  • G:S138T
  • G:K153E
  • G:T198I
  • G:P214S
  • G:P221L
  • G:T230A
  • G:I252T
  • G:A269V
  • G:T279I
  • G:Y285H
  • G:I288T
  • G:I310N
  • G:*311Q

    • SH

  • SH:I49T
  • SH:D64N
    • Deletions
    None
    Insertions
    ins_G:158:PK

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