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Crimean-Congo Hemorrhagic Fever Virus
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PP_0015FXD.1
Download
Download FASTA
Download metadata TSV
Display Name: Tajikistan/PP_0015FXD.1/2023-07-12
J. D'Addiego,
M. Mullojanova,
T. Hikmatov,
F. Tishkova &
R. Hewson
Sample details
Collection date
2023-07-12
Country
Tajikistan
Isolate name
CCHFV_K.Sh.21
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2025-04-06 03:03
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://pathoplexus.org/about/terms-of-use/open-data
Authors
Author affiliations
UK Health Security Agency, Research & Evaluation
INSDC
INSDC accession L
PV390622.1
INSDC accession M
PV390615.1
INSDC accession S
PV390604.1
NCBI release date
2025-04-05
Host
Host taxon ID
9606
Host name - scientific
Homo sapiens
Alignment and QC metrics L
Length L
12131
Completeness L
99.59%
# of SNPs L
1611
# of inserted bases L
47
# of deleted bases L
1
# of ambiguous bases L
26
# of unknown bases L
1
# of frame shifts L
0
# of stop codons L
0
Alignment and QC metrics M
Length M
5311
Completeness M
98.57%
# of SNPs M
1034
# of inserted bases M
1
# of deleted bases M
0
# of ambiguous bases M
16
# of unknown bases M
5
# of frame shifts M
0
# of stop codons M
0
Alignment and QC metrics S
Length S
1673
Completeness S
99.88%
# of SNPs S
223
# of inserted bases S
1
# of deleted bases S
0
# of ambiguous bases S
2
# of unknown bases S
0
# of frame shifts S
0
# of stop codons S
0
Submission details
Submission ID
PV390622.1.L/PV390615.1.M/PV390604.1.S
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-04-06 03:03:08 UTC
Date released
2025-04-06 03:03:40 UTC
Earliest release date
2025-04-05
Lineage
Segment S Lineage
IV.2
Nucleotide mutations
Mutations called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
L
L:
A
35
G
L:
G
43
C
L:
C
48
T
L:
T
49
C
L:
C
59
T
L:
C
64
T
L:
T
65
G
L:
G
71
T
L:
A
72
T
L:
C
85
T
L:
G
93
A
L:
C
105
T
L:
A
109
G
L:
G
112
A
L:
T
121
C
L:
T
131
A
L:
C
136
T
L:
C
148
T
Show more
M
M:
A
51
G
M:
A
70
G
M:
T
71
A
M:
A
80
G
M:
T
83
C
M:
G
84
T
M:
C
85
T
M:
T
86
C
M:
C
92
T
M:
C
96
T
M:
T
98
C
M:
T
100
C
M:
T
102
C
M:
T
105
C
M:
A
108
T
M:
A
112
G
M:
A
116
T
M:
A
117
G
Show more
S
S:
T
48
C
S:
G
54
A
S:
A
61
G
S:
C
64
T
S:
G
67
A
S:
T
79
C
S:
A
81
G
S:
G
99
A
S:
A
118
G
S:
C
142
T
S:
T
157
C
S:
C
166
T
S:
C
178
A
S:
T
182
C
S:
G
190
A
S:
G
196
A
S:
C
214
T
S:
C
217
T
Show more
Deletions
L:11996
Insertions
ins_L:66:CC, ins_L:11931:AT, ins_L:12108:TACCATTCATTTCAGTTTGATTATTTCTAGGGTGKGGGGAGAA, ins_M:5171:C, ins_S:1580:C
Amino acid mutations
Mutations called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
GPC
GPC:
H
2
Y
GPC:
I
3
T
GPC:
S
4
P
GPC:
M
6
L
GPC:
Y
7
C
GPC:
I
9
V
GPC:
Q
13
K
GPC:
C
15
W
GPC:
G
16
S
GPC:
L
17
S
GPC:
G
18
E
GPC:
E
19
G
GPC:
S
23
L
GPC:
H
24
S
GPC:
E
26
G
GPC:
R
28
Q
GPC:
N
30
S
GPC:
K
31
N
Show more
NP
NP:
N
9
S
NP:
R
15
K
NP:
D
116
E
NP:
T
124
A
NP:
G
125
N
NP:
N
150
H
NP:
H
195
R
NP:
D
199
E
NP:
I
246
V
NP:
R
270
K
NP:
S
275
N
NP:
S
301
G
NP:
V
436
I
RdRp
RdRp:
S
6
N
RdRp:
T
10
I
RdRp:
S
19
T
RdRp:
Y
60
N
RdRp:
R
63
H
RdRp:
S
67
V
RdRp:
R
80
K
RdRp:
V
82
I
RdRp:
L
90
I
RdRp:
I
114
V
RdRp:
I
157
M
RdRp:
T
163
A
RdRp:
A
168
T
RdRp:
M
172
V
RdRp:
R
174
K
RdRp:
S
205
P
RdRp:
N
206
Y
RdRp:
K
275
R
Show more
Deletions
None
Insertions
None
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