PP_0014A39.1

Display Name: Armenia/PP_0014A39.1/2023
A. Zhirova, Y. Lisitskaya, A. Volynkina, A. Manucharyan & G. Melik-Andreasyan

Sample details

Collection date
2023
Country
Armenia
Isolate name
521-ARM-TI-2023

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-03-03 03:31insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
Stavropol State Research Anti-Plague Institute, Laboratory for diagnostics of viral infections

INSDC

INSDC accession L
INSDC accession M
NCBI release date
2025-03-02

Host

Host taxon ID
Host name - scientific
Ixodoidea

Alignment and QC metrics L

Length L
437
Completeness L
3.61%
# of SNPs L
41
# of inserted bases L
0
# of deleted bases L
0
# of ambiguous bases L
0
# of unknown bases L
0
# of frame shifts L
0
# of stop codons L
0

Alignment and QC metrics M

Length M
435
Completeness M
8.11%
# of SNPs M
77
# of inserted bases M
0
# of deleted bases M
0
# of ambiguous bases M
0
# of unknown bases M
0
# of frame shifts M
0
# of stop codons M
0

Submission details

Submission ID
PQ878926.1.L/PQ878917.1.M
Submitting group
Date submitted
2025-03-03 03:31:20 UTC
Date released
2025-03-03 03:31:25 UTC
Earliest release date
2025-03-02

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

L

  • L:T131A
  • L:C148T
  • L:T151C
  • L:T154C
  • L:T160C
  • L:T163C
  • L:T202C
  • L:C205T
  • L:C228T
  • L:T229C
  • L:A240C
  • L:T241C
  • L:T253C
  • L:T254A
  • L:G264A
  • L:C265T
  • L:A268G
  • L:C276T

    • M

  • M:C4644T
  • M:C4652T
  • M:T4661G
  • M:A4664G
  • M:C4671T
  • M:T4676C
  • M:A4694G
  • M:A4701C
  • M:A4713G
  • M:A4730G
  • M:A4736G
  • M:T4742A
  • M:T4743C
  • M:G4745A
  • M:C4748T
  • M:A4751G
  • M:G4757A
  • M:T4763G
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

    Substitutions

    GPC

  • GPC:H1527Y
  • GPC:K1537Q
  • GPC:N1541D
  • GPC:S1564D
  • GPC:S1589G
  • GPC:G1590S
  • GPC:I1591V
  • GPC:V1595F
  • GPC:M1597I
  • GPC:F1600L
  • GPC:I1607V
  • GPC:I1610V
  • GPC:R1618K
  • GPC:F1633L
  • GPC:H1637L
  • GPC:K1652R
  • GPC:K1661R

    • RdRp

  • RdRp:S19T
  • RdRp:P51L
  • RdRp:D55A
  • RdRp:Y60N
  • RdRp:R63H
  • RdRp:S67L
  • RdRp:R80K
    • Deletions
    None
    Insertions
    None

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