PP_0014A39.1

Display Name: Armenia/PP_0014A39.1/2023-01-01
Zhirova, A.; Lisitskaya, Y.; Volynkina, A.; Manucharyan, A.; Melik-Andreasyan, G.

Submission details

Submission ID
PQ878926.1.L/PQ878917.1.M
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-03-03 03:31:20 UTC
Date released
2025-03-03 03:31:25 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2025-03-03 03:31insdc_ingest_userOPEN
Data use terms URL
https://pathoplexus.org/about/terms-of-use/open-data

Authors

Author affiliations
Stavropol State Research Anti-Plague Institute, Laboratory for diagnostics of viral infections

Alignment and QC metrics L

Completeness L
3.61%
Length L
437
Total ambiguous nucs L
0
Total deleted nucs L
0
Total frame shifts L
0
Total inserted nucs L
0
Total SNPs L
41
Total unknown nucs L
0

Alignment and QC metrics M

Completeness M
8.11%
Length M
435
Total ambiguous nucs M
0
Total deleted nucs M
0
Total frame shifts M
0
Total inserted nucs M
0
Total SNPs M
77
Total unknown nucs M
0

Sample details

Earliest release date
2025-03-02
Collection country
Armenia
Collection date
2023
Collection date (lower bound)
2023-01-01
Collection date (upper bound)
2023-12-31
Isolate name
521-ARM-TI-2023

Host

Host name scientific
Ixodoidea
Host taxon id
297308

INSDC

INSDC accession L
PQ878926.1
INSDC accession M
PQ878917.1
NCBI release date
2025-03-02

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

L

  • L:T131A
  • L:C148T
  • L:T151C
  • L:T154C
  • L:T160C
  • L:T163C
  • L:T202C
  • L:C205T
  • L:C228T
  • L:T229C
  • L:A240C
  • L:T241C
  • L:T253C
  • L:T254A
  • L:G264A
  • L:C265T
  • L:A268G
  • L:C276T

    • M

  • M:C4644T
  • M:C4652T
  • M:T4661G
  • M:A4664G
  • M:C4671T
  • M:T4676C
  • M:A4694G
  • M:A4701C
  • M:A4713G
  • M:A4730G
  • M:A4736G
  • M:T4742A
  • M:T4743C
  • M:G4745A
  • M:C4748T
  • M:A4751G
  • M:G4757A
  • M:T4763G
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

    Substitutions

    GPC

  • GPC:H1527Y
  • GPC:K1537Q
  • GPC:N1541D
  • GPC:S1564D
  • GPC:S1589G
  • GPC:G1590S
  • GPC:I1591V
  • GPC:V1595F
  • GPC:M1597I
  • GPC:F1600L
  • GPC:I1607V
  • GPC:I1610V
  • GPC:R1618K
  • GPC:F1633L
  • GPC:H1637L
  • GPC:K1652R
  • GPC:K1661R

    • RdRp

  • RdRp:S19T
  • RdRp:P51L
  • RdRp:D55A
  • RdRp:Y60N
  • RdRp:R63H
  • RdRp:S67L
  • RdRp:R80K
    • Deletions
    None
    Insertions
    None

    Report an issue with this sequence or metadata

    Create GitHub issue