This is not the latest version of this sequence entry.

The latest version is:PP_00110GZ.3

PP_00110GZ.1

Senegal/PP_00110GZ.1/2022-08

O. Sene

Institut Pasteur, Dakar, Virology

Sample details

Collection date

2022-08

Sampling location

Senegal

Data use terms

Changed	User	Data use terms
2025-01-22 09:24	insdc_ingest_user	OPEN

OPEN

Data use terms URL

https://pathoplexus.org/about/terms-of-use/open-data

INSDC

INSDC accession S

PP894735.1

NCBI release date

2025-01-18

Host

Homo sapiens

Submission details

Submission ID

PP894735.1.S

Submitting group

Automated Ingest from INSDC/NCBI Virus by Loculus

Date submitted

2025-01-22 09:24:35 UTC

Date released

2025-01-22 09:25:07 UTC

Earliest release date

2025-01-18

Lineage

Segment S Lineage

III

Alignment and QC

Length S

1673 (100%)

# of SNPs S

132

# of inserted bases S

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

S

G47C
A50G
G54A
G67A
G99A
G100A
C178A
T181C
G189A
T199C
G202A
G229A
C235T
A247G
G271A
C295T
A298G
A322G

Deletions

N/A

Insertions

S

ins_1577:A

Amino acid substitutions

Substitutions called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references