This is not the latest version of this sequence entry.

The latest version is:PP_00110AB.2

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PP_00110AB.1

Senegal/PP_00110AB.1/2022-09

O. Sene

Institut Pasteur, Dakar, Virology

Sample details

Collection date

2022-09

Sampling location

Senegal

Data use terms

Changed	User	Data use terms
2025-01-22 09:24	insdc_ingest_user	OPEN

OPEN

Data use terms URL

https://pathoplexus.org/about/terms-of-use/open-data

INSDC

INSDC accession M

PP894728.1

INSDC accession S

PP894730.1

NCBI release date

2025-01-18

Host

Homo sapiens

Submission details

Submission ID

PP894728.1.M/PP894730.1.S

Submitting group

Automated Ingest from INSDC/NCBI Virus by Loculus

Date submitted

2025-01-22 09:24:35 UTC

Date released

2025-01-22 09:25:07 UTC

Earliest release date

2025-01-18

Lineage

Segment S Lineage

Alignment and QC

Length M

5356 (99.8%)

# of SNPs M

141

# of ambiguous bases M

Length S

1686 (99.9%)

# of SNPs S

317

# of inserted bases S

# of deleted bases S

# of unknown bases S

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

M

T68C
A70G
C194T
C217T
T259C
C269T
C320T
T360C
A377G
T385C
C404T
T406C
C410T
C412A
G414A
C426T
C428T
C431T

S

C38A
T39C
G54A
A61G
G67A
G73A
T79C
A92C
G99A
G100A
A109G
A118G
T127C
A130G
C139T
C142T
C160T
T163C

Deletions

S

1512-1514

Insertions

S

ins_1582:TTACAGTCACCAAAAC, ins_1616:A

Amino acid substitutions

Substitutions called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references