REVOKED

PP_001107H.1

Senegal/PP_001107H.1/2022-08
O. Sene

Institut Pasteur, Dakar, Virology

Sample details

Collection date
2022-08
Sampling location
Senegal

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-01-22 09:24insdc_ingest_userOPEN
Data use terms URL

INSDC

INSDC accession M
NCBI release date
2025-01-18

Host

Host

Submission details

Submission ID
PP894725.1.M
Submitting group
Date submitted
2025-01-22 09:24:35 UTC
Date released
2025-01-22 09:25:07 UTC
Earliest release date
2025-01-18

Alignment and QC

Length M
5252 (98.8%)
# of SNPs M
149
# of deleted bases M
50

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

M

  • T68C
  • A70G
  • C194T
  • C217T
  • T259C
  • C269T
  • T301C
  • C320T
  • T360C
  • A377G
  • T385C
  • C404T
  • T406C
  • C410T
  • C412A
  • G414A
  • C426T
  • C428T
Deletions

M

5271-5320
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

GPC

  • GPC:P42L
  • GPC:L56P
  • GPC:L70S
  • GPC:S90P
  • GPC:V98A
  • GPC:L105S
  • GPC:A107E
  • GPC:G108S
  • GPC:P112S
  • GPC:A122T
  • GPC:P123L
  • GPC:N131S
  • GPC:S171P
  • GPC:Q191R
  • GPC:L216P
  • GPC:P226L
  • GPC:H238S
  • GPC:K250E
Deletions
N/A
Insertions
N/A

Report an issue with this sequence or metadata

Create GitHub issue