REVOKED

PP_001106K.1

Senegal/PP_001106K.1/2022-09
O. Sene

Institut Pasteur, Dakar, Virology

Sample details

Collection date
2022-09
Sampling location
Senegal

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-01-22 09:24insdc_ingest_userOPEN
Data use terms URL

INSDC

INSDC accession M
NCBI release date
2025-01-18

Host

Host

Submission details

Submission ID
PP894724.1.M
Submitting group
Date submitted
2025-01-22 09:24:35 UTC
Date released
2025-01-22 09:25:07 UTC
Earliest release date
2025-01-18

Alignment and QC

Length M
5360 (99.9%)
# of SNPs M
173

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

M

  • G124A
  • T140C
  • A214G
  • C217T
  • G220T
  • T259C
  • C320T
  • C334T
  • A339G
  • C344T
  • G345A
  • T360C
  • A377G
  • T385C
  • C404T
  • T406C
  • C410T
  • G414A
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

GPC

  • GPC:C11Y
  • GPC:N41S
  • GPC:P42L
  • GPC:S43I
  • GPC:L56P
  • GPC:P81L
  • GPC:T83A
  • GPC:G85R
  • GPC:S90P
  • GPC:V98A
  • GPC:L105S
  • GPC:G108S
  • GPC:P112S
  • GPC:P123L
  • GPC:N131S
  • GPC:G167D
  • GPC:K168R
  • GPC:S171P
Deletions
N/A
Insertions
N/A

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