REVOKED

PP_001105M.1

Display Name: Senegal/PP_001105M.1/2022-09
O. Sene

Sample details

Collection date
2022-09
Country
Senegal

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-01-22 09:24insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
Institut Pasteur, Dakar, Virology

INSDC

INSDC accession M
NCBI release date
2025-01-18

Host

Host taxon ID
Host name - scientific
Hyalomma impeltatum

Alignment and QC metrics M

Length M
5368
Completeness M
99.66%
# of SNPs M
1530
# of inserted bases M
82
# of deleted bases M
62
# of ambiguous bases M
0
# of unknown bases M
0
# of frame shifts M
1
# of stop codons M
0
Frame shifts M
GPC:86-96(nt:347-380)

Submission details

Submission ID
PP894723.1.M
Submitting group
Date submitted
2025-01-22 09:24:35 UTC
Date released
2025-01-22 09:25:07 UTC
Earliest release date
2025-01-18

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

M

  • M:G50T
  • M:A51G
  • M:A52T
  • M:G56T
  • M:A57G
  • M:T58A
  • M:T59A
  • M:G60A
  • M:A64G
  • M:T65A
  • M:C66T
  • M:A69G
  • M:A70T
  • M:T71G
  • M:T72A
  • M:C74G
  • M:G76A
  • M:A80G
    • Deletions
    M:663-689, M:5166-5200
    Insertions
    ins_M:224:ATGTCTGTGCTG, ins_M:346:AGAA, ins_M:380:AAGAGTCAGAAATGCTCAGGGCTCAAAACCCA, ins_M:815:TTCATAAGCCCT, ins_M:5253:TGCCCCAACTAT, ins_M:5295:CAACTTTGCT

    Amino acid mutations

    Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

    Substitutions

    GPC

  • GPC:M1E
  • GPC:H2F
  • GPC:I3M
  • GPC:S4L
  • GPC:M6T
  • GPC:Y7N
  • GPC:A8F
  • GPC:I9F
  • GPC:L10F
  • GPC:L12Q
  • GPC:Q13L
  • GPC:C15W
  • GPC:L17G
  • GPC:E19G
  • GPC:T20V
  • GPC:H21A
  • GPC:G22S
  • GPC:S23G
    • Deletions
    GPC:26-54, GPC:182-206
    Insertions
    ins_GPC:131:ESEMLRAQNPSTTAGSGASTPINTTSNKPDVNSPTSPILEAKSSP, ins_GPC:221:SKQINTTTLGIPPKIQATQS

    Report an issue with this sequence or metadata

    Create GitHub issue