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The latest version is:PP_001105M.2

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PP_001105M.1

Senegal/PP_001105M.1/2022-09

O. Sene

Institut Pasteur, Dakar, Virology

Sample details

Collection date

2022-09

Sampling location

Senegal

Data use terms

Changed	User	Data use terms
2025-01-22 09:24	insdc_ingest_user	OPEN

OPEN

Data use terms URL

https://pathoplexus.org/about/terms-of-use/open-data

INSDC

INSDC accession M

PP894723.1

NCBI release date

2025-01-18

Host

Hyalomma impeltatum

Submission details

Submission ID

PP894723.1.M

Submitting group

Automated Ingest from INSDC/NCBI Virus by Loculus

Date submitted

2025-01-22 09:24:35 UTC

Date released

2025-01-22 09:25:07 UTC

Earliest release date

2025-01-18

Alignment and QC

Length M

5368 (99.7%)

# of SNPs M

1530

# of inserted bases M

# of deleted bases M

# of frame shifts M

Frame shifts M

GPC:86-96(nt:347-380)

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

M

G50T
A51G
A52T
G56T
A57G
T58A
T59A
G60A
A64G
T65A
C66T
A69G
A70T
T71G
T72A
C74G
G76A
A80G

Deletions

M

663-689, 5166-5200

Insertions

M

ins_224:ATGTCTGTGCTG, ins_346:AGAA, ins_380:AAGAGTCAGAAATGCTCAGGGCTCAAAACCCA, ins_815:TTCATAAGCCCT, ins_5253:TGCCCCAACTAT, ins_5295:CAACTTTGCT

Amino acid substitutions

Substitutions called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references