PP_001104P.3

Senegal/PP_001104P.3/2022-08
O. Sene, S. N. Sagne, D. Ngom, M. Bocoum, M. K. Diallo, A. Khoule, E. T. Faye, S. M. Diop, I. Diallo, C. Loucoubar, M. Diallo, N. Dia, Y. Sall, B. Diop, M. Ndiaye, A. A. Sall, M. Weidmann, M. M. Diagne, M. Fall, O. Faye, E. Simon-Loriere, D. Diallo, M. A. Barry & G. Fall

Institut Pasteur, Dakar, Virology

Sample details

Collection date
2022-08
Sampling location
Senegal
Isolate name
sh402429

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-01-22 09:24insdc_ingest_userOPEN
Data use terms URL

INSDC

INSDC accession M
NCBI release date
2025-01-18

Host

Host

Submission details

Submission ID
PP894722.1.M
Submitting group
Date submitted
2025-09-04 22:25:46 UTC
Date released
2025-09-04 22:26:16 UTC
Earliest release date
2025-01-18

Alignment and QC

Length M
5363 (99.9%)
# of SNPs M
179

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

M

  • T3A
  • C4A
  • A6G
  • G124A
  • T140C
  • A214G
  • C217T
  • G220T
  • T259C
  • C320T
  • C334T
  • A339G
  • G345A
  • T360C
  • A377G
  • T385C
  • C404T
  • T406C
Deletions
N/A
Insertions
N/A

Amino acid mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

GPC

  • GPC:C11Y
  • GPC:N41S
  • GPC:P42L
  • GPC:S43I
  • GPC:L56P
  • GPC:P81L
  • GPC:T83A
  • GPC:G85R
  • GPC:S90P
  • GPC:V98A
  • GPC:L105S
  • GPC:G108S
  • GPC:P112S
  • GPC:P123L
  • GPC:N131S
  • GPC:G167D
  • GPC:K168R
  • GPC:S171P
Deletions
N/A
Insertions
N/A

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