PP_0010YBD.2

Display Name: USA/PP_0010YBD.2/2024-12-12
E. B. Fox, J. M. Garrigues & N. M. Green

Sample details

Collection date
2024-12-12
Country
USA
Isolate name
Monkeypox virus/Human/USA/CA-LACPHL-MA00721/2024

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-01-19 10:13insdc_ingest_userOPEN
Data use terms URL

Clade & Lineage

Clade
IIb
Outbreak
sh2017
Lineage
F.1

Authors

Author affiliations
Los Angeles County Department of Public Health, Los Angeles County Public Health Laboratories

INSDC

INSDC accession
NCBI release date
2025-01-10
NCBI update date
2025-10-01

Host

Host taxon ID
Host name - scientific
Homo sapiens

Alignment and QC metrics

Length
194252
Completeness
85.28%
# of SNPs
76
# of inserted bases
51
# of deleted bases
108
# of ambiguous bases
1
# of unknown bases
26133
# of frame shifts
0
# of stop codons
0

Submission details

Submission ID
PQ857765.2
Submitting group
Date submitted
2025-10-01 18:53:26 UTC
Date released
2025-10-01 18:56:03 UTC
Earliest release date
2025-01-10

Nucleotide mutations

Mutations called relative to the NC_063383.1 reference

Substitutions

  • G2591A
  • G3111A
  • G3522A
  • C3818T
  • C7771T
  • G11668A
  • G14000T
  • G16748A
  • G16767A
  • A18769G
  • G21723A
  • C23564T
  • G25661A
  • T28175C
  • G30367A
  • G31053A
  • G34459A
  • G37202A
    • Deletions
    133177-133186, 179078-179175
    Insertions
    ins_133102:TTT, ins_133281:NN, ins_174307:NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN

    Amino acid mutations

    Mutations called relative to the NC_063383.1 reference

    Substitutions

    OPG002

  • OPG002:S54F

    • OPG003

  • OPG003:D264N

    • OPG025

  • OPG025:A423D

    • OPG029

  • OPG029:R108C

    • OPG047

  • OPG047:R48C

    • OPG053

  • OPG053:P78S

    • OPG056

  • OPG056:E125K

    • OPG057

  • OPG057:A290V
  • OPG057:E353K

    • OPG071

  • OPG071:L108F

    • OPG072

  • OPG072:D56N

    • OPG092

  • OPG092:D196N

    • OPG093

  • OPG093:S30L
  • OPG093:D88N

    • OPG094

  • OPG094:M142I

    • OPG098

  • OPG098:E162K

    • OPG105

  • OPG105:S734L

    • OPG109

  • OPG109:H740Y

    • OPG118

  • OPG118:K606E

    • OPG136

  • OPG136:D98N

    • OPG139

  • OPG139:A17T

    • OPG145

  • OPG145:E62K
  • OPG145:R243Q
  • OPG145:E435K

    • OPG176

  • OPG176:H221Y

    • OPG185

  • OPG185:T219I

    • OPG193

  • OPG193:L263F

    • OPG210

  • OPG210:D209N
  • OPG210:P722S
    • Deletions
    None
    Insertions
    None

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