PP_0010GSY.1

USA/PP_0010GSY.1/2024-10-03
E. B. Fox, J. M. Garrigues & N. M. Green

Los Angeles County Department of Public Health, Los Angeles County Public Health Laboratories

Sample details

Collection date
2024-10-03
Sampling location
USA
Isolate name
Monkeypox virus/Human/USA/CA-LACPHL-MA00705/2024

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2024-12-09 18:48insdc_ingest_userOPEN
Data use terms URL

Clade & Lineage

Clade
IIb
Outbreak
sh2017
Lineage
F.1

INSDC

INSDC accession
NCBI release date
2024-10-18
NCBI update date
2024-10-18

Host

Host

Submission details

Submission ID
PQ479561.1
Submitting group
Date submitted
2024-12-09 18:47:55 UTC
Date released
2024-12-09 19:04:58 UTC
Earliest release date
2024-10-18

Alignment and QC

Length
193703 (96.5%)
# of SNPs
82
# of inserted bases
51
# of deleted bases
111
# of ambiguous bases
2
# of unknown bases
3392

Nucleotide mutations

Mutations called relative to the NC_063383.1 reference

Substitutions

  • G2591A
  • G3111A
  • G3522A
  • C3818T
  • C7771T
  • G11668A
  • G14000T
  • G15428A
  • G16748A
  • G16767A
  • A18769G
  • C20453T
  • G21723A
  • C23564T
  • G25661A
  • T28175C
  • G30367A
  • G31053A
Deletions

133177-133186, 136552-136554, 179078-179175
Insertions

ins_133106:NNN, ins_133281:GC, ins_174073:NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN

Amino acid substitutions

Substitutions called relative to the NC_063383.1 reference

Substitutions

OPG002

  • OPG002:S54F

OPG003

  • OPG003:D264N

OPG025

  • OPG025:A423D

OPG029

  • OPG029:R108C

OPG047

  • OPG047:R48C

OPG053

  • OPG053:P78S

OPG056

  • OPG056:E125K

OPG057

  • OPG057:E353K

OPG071

  • OPG071:L108F

OPG072

  • OPG072:D56N

OPG092

  • OPG092:D196N

OPG093

  • OPG093:S30L
  • OPG093:D88N

OPG094

  • OPG094:M142I

OPG098

  • OPG098:E162K

OPG105

  • OPG105:S734L

OPG109

  • OPG109:H740Y

OPG117

  • OPG117:S297L

OPG118

  • OPG118:K606E

OPG136

  • OPG136:D98N

OPG139

  • OPG139:A17T

OPG145

  • OPG145:E62K
  • OPG145:R243Q
  • OPG145:E435K

OPG150

  • OPG150:S307L

OPG176

  • OPG176:H221Y

OPG185

  • OPG185:T219I

OPG193

  • OPG193:L263F

OPG210

  • OPG210:D209N
  • OPG210:P722S
  • OPG210:M1741I
Deletions

OPG153

OPG153:385
Insertions
N/A

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