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The latest version is:PP_000TRCY.2

PP_000TRCY.1

Version 1

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USA/PP_000TRCY.1/2022-05

C. Gigante, D. Xia, M. Seabolt, H. Zhao, K. Wilkins, A. McCollum, C. Hutson, W. Davidson, A. Rao, N. Plipat & Y. Li

CDC, DHCPP-PRB

Sample details

Collection date

2022-05

Sampling location

USA (GA)

Isolate name

MPXV_USA_2022_GA001

Data use terms

Changed	User	Data use terms
2024-12-09 18:48	insdc_ingest_user	OPEN

OPEN

Data use terms URL

https://pathoplexus.org/about/terms-of-use/open-data

Clade & Lineage

Clade

IIb

Outbreak

sh2017

Lineage

B.1.5

INSDC

INSDC accession

OP150925.1

BioProject accession

PRJNA849962

BioSample accession

SAMN30056189

NCBI release date

2022-08-04

NCBI update date

2022-08-17

Host

human (Homo sapiens)

Submission details

Submission ID

OP150925.1

Submitting group

Automated Ingest from INSDC/NCBI Virus by Loculus

Date submitted

2024-12-09 18:47:55 UTC

Date released

2024-12-09 18:51:44 UTC

Earliest release date

2022-08-04

Alignment and QC

Length

197762 (100%)

# of SNPs

# of inserted bases

586

# of deleted bases

# of ambiguous bases

Nucleotide mutations

Mutations called relative to the NC_063383.1 reference

Substitutions

G1262A
G2591A
G3111A
G3522A
C3818T
C7771T
G14000T
G15428A
A18769G
G21723A
C23564T
G25661A
T28175C
G30367A
G31053A
G34459A
G37202A
G38360A

Deletions

607-609, 133177-133186, 150586-150602, 196615-196617

Insertions

ins_4806:TAACTAACTTATGACTTAACTAACTTATGACTTAACTAACTTATGACTTAACTAACTTATGACTTAACTAACTTATGACTTAACTAACTTATGACTTAACTAACTTATGACTTAACTAACTTATGACT, ins_133102:TT, ins_173317:ATAT, ins_179243:CATTATATACATTATATACATTATATACATTATATACATTATATACATTATATACATTATATACATTATATACATTATATACATTATATACATTATATACATTATATACATTATATACATTATATACATTATATACATTATATACATTATATACATTATATACATTATATACATTATATACATTATATACATTATATACATTATA...

Amino acid substitutions

Substitutions called relative to the NC_063383.1 reference

Substitutions

OPG001

OPG001:S105L

OPG002

OPG002:S54F

OPG003

OPG003:D264N

OPG025

OPG025:A423D

OPG047

OPG047:R48C

OPG053

OPG053:P78S

OPG056

OPG056:E125K

OPG057

OPG057:E353K

OPG071

OPG071:L108F

OPG072

OPG072:D56N

OPG092

OPG092:D196N

OPG093

OPG093:S30L
OPG093:D88N

OPG094

OPG094:M142I

OPG098

OPG098:E162K

OPG105

OPG105:S734L

OPG109

OPG109:H740Y

OPG118

OPG118:K606E

OPG136

OPG136:D98N

OPG139

OPG139:A17T

OPG145

OPG145:E62K
OPG145:R243Q
OPG145:E435K

OPG150

OPG150:S307L

OPG176

OPG176:H221Y

OPG193

OPG193:L263F

OPG210

OPG210:D209N
OPG210:P722S
OPG210:M1741I