PP_000TA2Z.2

USA/PP_000TA2Z.2
S. Hunt, N. Shashan, L. Tallon, L. Sadzewicz, K. Vavikolanu, A. Mehta, J. Aluvathingal, S. Nadendla, T. Myers, Y. Yan & H. Sichtig

US Food and Drug Administration, Center for Devices and Radiological Health

Sample details

Sampling location
USA (MD)
Isolate name
WRAIR 7-61

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2024-12-09 18:48insdc_ingest_userOPEN
Data use terms URL

Clade & Lineage

Clade
II
Outbreak
None
Lineage
None

INSDC

INSDC accession
BioProject accession
BioSample accession
NCBI release date
2022-07-30
NCBI update date
2022-07-30
Raw reads accession

Host

Host

Submission details

Submission ID
OK573158.1
Submitting group
Date submitted
2025-02-03 15:01:44 UTC
Date released
2025-02-03 15:05:27 UTC
Earliest release date
2022-07-30

Alignment and QC

Length
650 (0.66%)
# of SNPs
52
# of inserted bases
9
# of deleted bases
660
# of frame shifts
3
Frame shifts
OPG052:37-42(nt:33872-33887),OPG052:59-65(nt:33801-33822),OPG053:174-213(nt:34052-34171)

Nucleotide mutations

Mutations called relative to the NC_063383.1 reference

Substitutions

  • G33741A
  • T33746A
  • A33756G
  • C33757G
  • A33758T
  • G33761T
  • A33763T
  • A33767G
  • A33798T
  • T33802A
  • A33803T
  • A33816C
  • T33858C
  • T33861A
  • A33864T
  • T33865A
  • T33876C
  • T33877C
Deletions

33414, 33712-33721, 33726-33736, 33747-33752, 33769, 33772-33792, 33805-33814, 33823-33856, 33868-33871, 33888-33892, 33921-33923, 33933-33965, 33973-33984, 34000-34023, 34056-34098, 34106-34165, 34172-34553
Insertions

ins_34031:AGAA, ins_34044:GGTCA

Amino acid substitutions

Substitutions called relative to the NC_063383.1 reference

Substitutions

OPG052

  • OPG052:M1I
  • OPG052:G3E
Deletions

OPG052

OPG052:5-36, OPG052:43-58
Insertions

OPG052

ins_OPG052:52:SLLPVDEVHVNHG

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