PP_000TA11.2

USA/PP_000TA11.2
S. Hunt, N. Shashan, L. Tallon, L. Sadzewicz, K. Vavikolanu, A. Mehta, J. Aluvathingal, S. Nadendla, T. Myers, Y. Yan & H. Sichtig

US Food and Drug Administration, Center for Devices and Radiological Health

Sample details

Sampling location
USA (MD)
Isolate name
WRAIR 7-61

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2024-12-09 18:48insdc_ingest_userOPEN
Data use terms URL

Clade & Lineage

Clade
IIa
Outbreak
None
Lineage
None

INSDC

INSDC accession
BioProject accession
BioSample accession
NCBI release date
2022-07-30
NCBI update date
2022-07-30
Raw reads accession

Host

Host

Submission details

Submission ID
OK573157.1
Submitting group
Date submitted
2025-02-03 15:01:44 UTC
Date released
2025-02-03 15:05:27 UTC
Earliest release date
2022-07-30

Alignment and QC

Length
682 (0.56%)
# of SNPs
10
# of inserted bases
1
# of deleted bases
423
# of frame shifts
1
Frame shifts
OPG189:381-562(nt:164472-165018)

Nucleotide mutations

Mutations called relative to the NC_063383.1 reference

Substitutions

  • A164153T
  • A164157T
  • T164196C
  • C164200G
  • C164202T
  • A164644T
  • C164835T
  • T164848C
  • A165108T
  • G165247C
Deletions

164158-164193, 164209-164280, 164287-164471, 165113-165242
Insertions

ins_165109:C

Amino acid substitutions

Substitutions called relative to the NC_063383.1 reference

Substitutions

OPG189

  • OPG189:N237I
  • OPG189:N239I

OPG190

  • OPG190:Q42H
Deletions

OPG189

OPG189:242-286, OPG189:290-380
Insertions
N/A

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