PP_000TA03.2

USA/PP_000TA03.2
S. Hunt, N. Shashan, L. Tallon, L. Sadzewicz, K. Vavikolanu, A. Mehta, J. Aluvathingal, S. Nadendla, T. Myers, Y. Yan & H. Sichtig

US Food and Drug Administration, Center for Devices and Radiological Health

Sample details

Sampling location
USA (MD)
Isolate name
WRAIR 7-61

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2024-12-09 18:48insdc_ingest_userOPEN
Data use terms URL

Clade & Lineage

Clade
unassigned
Outbreak
None
Lineage
None

INSDC

INSDC accession
BioProject accession
BioSample accession
NCBI release date
2022-07-30
NCBI update date
2022-07-30
Raw reads accession

Host

Host

Submission details

Submission ID
OK573156.1
Submitting group
Date submitted
2025-02-03 15:01:44 UTC
Date released
2025-02-03 15:05:27 UTC
Earliest release date
2022-07-30

Alignment and QC

Length
694 (0.513%)
# of SNPs
34
# of deleted bases
318

Nucleotide mutations

Mutations called relative to the NC_063383.1 reference

Substitutions

  • C156895G
  • T156896G
  • C156899G
  • T156900A
  • T156964G
  • T156967C
  • G156970T
  • A156996C
  • A156999C
  • T157030C
  • A157035T
  • T157038A
  • G157051C
  • T157084A
  • A157106C
  • A157108C
  • T157110A
  • A157114C
Deletions

156877-156893, 156906-156962, 156974-156989, 156993, 157004-157025, 157039-157047, 157055-157081, 157089-157104, 157118-157147, 157158-157179, 157200-157249, 157260-157272, 157279-157297, 157678-157696
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_063383.1 reference

Substitutions
N/A
Deletions
N/A
Insertions
N/A

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