PP_000T9Z5.2

USA/PP_000T9Z5.2
S. Hunt, N. Shashan, L. Tallon, L. Sadzewicz, K. Vavikolanu, A. Mehta, J. Aluvathingal, S. Nadendla, T. Myers, Y. Yan & H. Sichtig

US Food and Drug Administration, Center for Devices and Radiological Health

Sample details

Sampling location
USA (MD)
Isolate name
WRAIR 7-61

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2024-12-09 18:48insdc_ingest_userOPEN
Data use terms URL

Clade & Lineage

Clade
II
Outbreak
None
Lineage
None

INSDC

INSDC accession
BioProject accession
BioSample accession
NCBI release date
2022-07-30
NCBI update date
2022-07-30
Raw reads accession

Host

Host

Submission details

Submission ID
OK573155.1
Submitting group
Date submitted
2025-02-03 15:01:44 UTC
Date released
2025-02-03 15:05:27 UTC
Earliest release date
2022-07-30

Alignment and QC

Length
700 (12.5%)
# of SNPs
24
# of inserted bases
2
# of deleted bases
23989
# of frame shifts
3
Frame shifts
OPG180:169-208(nt:153195-153315),OPG180:250-251(nt:153437-153444),OPG180:274-276(nt:153510-153519)

Nucleotide mutations

Mutations called relative to the NC_063383.1 reference

Substitutions

  • G152415A
  • A153196T
  • A153199C
  • G153200C
  • T153312A
  • T153345A
  • A153347G
  • T153367A
  • C153368A
  • G153379T
  • A153383G
  • T153386G
  • A153438C
  • T153439C
  • A153459C
  • A153462G
  • A153465T
  • C153466T
Deletions

152423-152591, 153193, 153194, 153205-153308, 153316-153341, 153349-153363, 153373-153378, 153388-153436, 153445-153458, 153472-153509, 153520-153538, 153548-177094
Insertions

ins_152676:AA

Amino acid substitutions

Substitutions called relative to the NC_063383.1 reference

Substitutions

OPG180

  • OPG180:F298K
  • OPG180:L301G
  • OPG180:K306P
  • OPG180:D320F
  • OPG180:D325T
  • OPG180:G326E
Deletions

OPG180

OPG180:168, OPG180:209-249, OPG180:252-273, OPG180:277-296, OPG180:307-317
Insertions
N/A

Report an issue with this sequence or metadata

Create GitHub issue