PP_000T9UF.2

USA/PP_000T9UF.2
S. Hunt, N. Shashan, L. Tallon, L. Sadzewicz, K. Vavikolanu, A. Mehta, J. Aluvathingal, S. Nadendla, T. Myers, Y. Yan & H. Sichtig

US Food and Drug Administration, Center for Devices and Radiological Health

Sample details

Sampling location
USA (MD)
Isolate name
WRAIR 7-61

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2024-12-09 18:48insdc_ingest_userOPEN
Data use terms URL

Clade & Lineage

Clade
Ia
Outbreak
None
Lineage
None

INSDC

INSDC accession
BioProject accession
BioSample accession
NCBI release date
2022-07-30
NCBI update date
2022-07-30
Raw reads accession

Host

Host

Submission details

Submission ID
OK573150.1
Submitting group
Date submitted
2025-02-03 15:01:44 UTC
Date released
2025-02-03 15:04:56 UTC
Earliest release date
2022-07-30

Alignment and QC

Length
847 (0.584%)
# of SNPs
22
# of inserted bases
1
# of deleted bases
306
# of frame shifts
5
Frame shifts
OPG156:9-306(nt:138492-139387),OPG157:29-30(nt:139521-139524),OPG157:45-46(nt:139473-139476),OPG157:75-79(nt:139372-139387),OPG158:3-10(nt:139741-139763)

Nucleotide mutations

Mutations called relative to the NC_063383.1 reference

Substitutions

  • A139475C
  • T139481A
  • T139488G
  • A139568T
  • A139571T
  • T139573A
  • T139577C
  • G139578C
  • T139587G
  • A139623G
  • A139626G
  • T139628C
  • T139640G
  • A139745T
  • G139749A
  • A139752T
  • T139755C
  • A139759T
Deletions

139388-139395, 139399-139472, 139477, 139489-139520, 139525-139564, 139580-139582, 139589-139606, 139614-139619, 139629-139637, 139644-139740, 139768-139776, 140134-140142
Insertions

ins_139763:G

Amino acid substitutions

Substitutions called relative to the NC_063383.1 reference

Substitutions

OPG157

  • OPG157:N15H

OPG159

  • OPG159:I4V

OPG160

  • OPG160:K258M
  • OPG160:L259S
Deletions

OPG156

OPG156:6-8

OPG157

OPG157:16-28, OPG157:31-44, OPG157:47-70, OPG157:72-74

OPG158

OPG158:11-42

OPG159

OPG159:124-126
Insertions
N/A

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