PP_000T9RM.2

USA/PP_000T9RM.2
S. Hunt, N. Shashan, L. Tallon, L. Sadzewicz, K. Vavikolanu, A. Mehta, J. Aluvathingal, S. Nadendla, T. Myers, Y. Yan & H. Sichtig

US Food and Drug Administration, Center for Devices and Radiological Health

Sample details

Sampling location
USA (MD)
Isolate name
WRAIR 7-61

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2024-12-09 18:48insdc_ingest_userOPEN
Data use terms URL

Clade & Lineage

Clade
IIb
Outbreak
sh2017
Lineage
B.1.6

INSDC

INSDC accession
BioProject accession
BioSample accession
NCBI release date
2022-07-30
NCBI update date
2022-07-30
Raw reads accession

Host

Host

Submission details

Submission ID
OK573147.1
Submitting group
Date submitted
2025-02-03 15:01:44 UTC
Date released
2025-02-03 15:04:56 UTC
Earliest release date
2022-07-30

Alignment and QC

Length
950 (3.89%)
# of SNPs
209
# of inserted bases
50
# of deleted bases
6773
# of frame shifts
11
# of stop codons
2
Frame shifts
OPG083:85-87(nt:64458-64464),OPG083:106-126(nt:64339-64401),OPG083:134-140(nt:64297-64317),OPG083:146-155(nt:64253-64282),OPG083:171-196(nt:64130-64206),OPG083:202-210(nt:64089-64115),OPG083:221-321(nt:63755-64056),OPG083:330-333(nt:63720-63729),OPG083:336-381(nt:63576-63711),OPG083:386-390(nt:63548-63561),OPG083:396-424(nt:63445-63533)
Stop Codons
OPG083:144,OPG083:145

Nucleotide mutations

Mutations called relative to the NC_063383.1 reference

Substitutions

  • G63253T
  • T63513G
  • G63517A
  • G63518C
  • C63520A
  • C63521A
  • T63524C
  • T63525C
  • T63526A
  • C63528T
  • C63529A
  • T63535A
  • T63536G
  • T63537G
  • A63540G
  • T63545C
  • T63546A
  • C63552A
Deletions

63547, 63571-63575, 63610-63638, 63670-63672, 63730-63748, 63753, 63754, 63774-63776, 63811, 63812, 63829-63838, 63844-63860, 63868-63873, 63878, 63892-63899, 63913-63918, 63922-63927, 63936-63951, 63964-63969, 64000-64020, 64030-64034, 64039, 64066-64074, 64078-64088, 64096-64101, 64116-64120, 64129, 64159-64167, 64207, 64216-64252, 64265-64273, 64318, 64325-64338, 64345-64355,...
Insertions

ins_63533:TCCG, ins_63561:ATGGAAT, ins_63584:T, ins_63595:GA, ins_63711:CCTG, ins_63719:GTGG, ins_64056:TG, ins_64110:A, ins_64179:TTGGTATT, ins_64194:ATCGGATGA, ins_64282:G, ins_64296:CTACTAA

Amino acid substitutions

Substitutions called relative to the NC_063383.1 reference

Substitutions

OPG083

  • OPG083:N42L
  • OPG083:C43A
  • OPG083:S144*
  • OPG083:R145*
Deletions

OPG083

OPG083:49-84, OPG083:88-105, OPG083:127-133, OPG083:156-167, OPG083:200, OPG083:201, OPG083:211-217, OPG083:322-329, OPG083:334, OPG083:335, OPG083:382
Insertions

OPG083

ins_OPG083:394:*EHPP

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