PP_000T9KZ.2

USA/PP_000T9KZ.2
S. Hunt, N. Shashan, L. Tallon, L. Sadzewicz, K. Vavikolanu, A. Mehta, J. Aluvathingal, S. Nadendla, T. Myers, Y. Yan & H. Sichtig

US Food and Drug Administration, Center for Devices and Radiological Health

Sample details

Sampling location
USA (MD)
Isolate name
WRAIR 7-61

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2024-12-09 18:48insdc_ingest_userOPEN
Data use terms URL

Clade & Lineage

Clade
IIa
Outbreak
None
Lineage
None

INSDC

INSDC accession
BioProject accession
BioSample accession
NCBI release date
2022-07-30
NCBI update date
2022-07-30
Raw reads accession

Host

Host

Submission details

Submission ID
OK573141.1
Submitting group
Date submitted
2025-02-03 15:01:44 UTC
Date released
2025-02-03 15:04:56 UTC
Earliest release date
2022-07-30

Alignment and QC

Length
1245 (1.57%)
# of SNPs
4
# of deleted bases
1848
# of frame shifts
1
Frame shifts
OPG198:240(nt:170753-170757)

Nucleotide mutations

Mutations called relative to the NC_063383.1 reference

Substitutions

  • T170757G
  • G171068A
  • A171675G
  • G172324A
Deletions

170682-170752, 170758-170869, 170875-170907, 170918, 172119-172320, 172326-172364, 172372-173761
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_063383.1 reference

Substitutions

OPG198

  • OPG198:Y184F

OPG199

  • OPG199:K230E

OPG200

  • OPG200:L71K
  • OPG200:V72K
Deletions

OPG198

OPG198:185-239
Insertions
N/A

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