PP_000T9G6.2

USA/PP_000T9G6.2
S. Hunt, N. Shashan, L. Tallon, L. Sadzewicz, K. Vavikolanu, A. Mehta, J. Aluvathingal, S. Nadendla, T. Myers, Y. Yan & H. Sichtig

US Food and Drug Administration, Center for Devices and Radiological Health

Sample details

Sampling location
USA (MD)
Isolate name
WRAIR 7-61

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2024-12-09 18:48insdc_ingest_userOPEN
Data use terms URL

Clade & Lineage

Clade
unassigned
Outbreak
None
Lineage
None

INSDC

INSDC accession
BioProject accession
BioSample accession
NCBI release date
2022-07-30
NCBI update date
2022-07-30
Raw reads accession

Host

Host

Submission details

Submission ID
OK573138.1
Submitting group
Date submitted
2025-02-03 15:01:44 UTC
Date released
2025-02-03 15:04:56 UTC
Earliest release date
2022-07-30

Alignment and QC

Length
1416 (9.58%)
# of SNPs
61
# of deleted bases
17471
# of frame shifts
5
Frame shifts
OPG131:36(nt:112044-112047),OPG131:88-162(nt:112200-112425),OPG132:16-373(nt:112422-113495),OPG133:558-638(nt:113785-114027),OPG133:654-711(nt:113564-113737)

Nucleotide mutations

Mutations called relative to the NC_063383.1 reference

Substitutions

  • A111732C
  • A111736G
  • T111769C
  • G111775A
  • T111855G
  • T111857G
  • A111863G
  • T111865G
  • G111942C
  • G111943T
  • A111945G
  • G111946C
  • A111947G
  • A111949C
  • C111950G
  • A111953C
  • C111984A
  • A111985C
Deletions

111738-111767, 111776-111799, 111805-111852, 111866-111936, 111956-111982, 112030-112043, 112048-112189, 112198, 112199, 112206-112274, 112282-112325, 113496-113517, 113526-113540, 113545-113666, 113675-113714, 113722-113727, 113738-113750, 113762-113776, 113784, 113789-113792, 113798-113911, 113932-113945, 113951-114022, 114028-114086, 114094-114108, 114116-130603
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_063383.1 reference

Substitutions

OPG130

  • OPG130:F7P
  • OPG130:L11P
  • OPG130:E13R

OPG132

  • OPG132:Y8S

OPG133

  • OPG133:K468D
  • OPG133:M486S
  • OPG133:S487T
  • OPG133:A503E
  • OPG133:M505A

OPG151

  • OPG151:N563I
Deletions

OPG131

OPG131:37-87

OPG132

OPG132:9-15

OPG133

OPG133:488-501, OPG133:514-557, OPG133:639-653
Insertions

OPG130

ins_OPG130:8:PPDV

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