PP_000T98N.2

USA/PP_000T98N.2
S. Hunt, N. Shashan, L. Tallon, L. Sadzewicz, K. Vavikolanu, A. Mehta, J. Aluvathingal, S. Nadendla, T. Myers, Y. Yan & H. Sichtig

US Food and Drug Administration, Center for Devices and Radiological Health

Sample details

Sampling location
USA (MD)
Isolate name
WRAIR 7-61

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2024-12-09 18:48insdc_ingest_userOPEN
Data use terms URL

Clade & Lineage

Clade
IIa
Outbreak
None
Lineage
None

INSDC

INSDC accession
BioProject accession
BioSample accession
NCBI release date
2022-07-30
NCBI update date
2022-07-30
Raw reads accession

Host

Host

Submission details

Submission ID
OK573130.1
Submitting group
Date submitted
2025-02-03 15:01:44 UTC
Date released
2025-02-03 15:06:57 UTC
Earliest release date
2022-07-30

Alignment and QC

Length
1904 (3.65%)
# of SNPs
6
# of deleted bases
5295
# of frame shifts
1
Frame shifts
OPG205:471-788(nt:177065-178019)

Nucleotide mutations

Mutations called relative to the NC_063383.1 reference

Substitutions

  • C175065A
  • G175396A
  • T176160C
  • G176792T
  • A176794T
  • G177067T
Deletions

176796-177064, 177072-182097
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_063383.1 reference

Substitutions

OPG204

  • OPG204:N178K
  • OPG204:E289K

OPG205

  • OPG205:W169R
  • OPG205:Y380F
Deletions

OPG205

OPG205:381-470
Insertions
N/A

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