PP_000T96S.2

USA/PP_000T96S.2
S. Hunt, N. Shashan, L. Tallon, L. Sadzewicz, K. Vavikolanu, A. Mehta, J. Aluvathingal, S. Nadendla, T. Myers, Y. Yan & H. Sichtig

US Food and Drug Administration, Center for Devices and Radiological Health

Sample details

Sampling location
USA (MD)
Isolate name
WRAIR 7-61

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2024-12-09 18:48insdc_ingest_userOPEN
Data use terms URL

Clade & Lineage

Clade
IIa
Outbreak
None
Lineage
None

INSDC

INSDC accession
BioProject accession
BioSample accession
NCBI release date
2022-07-30
NCBI update date
2022-07-30
Raw reads accession

Host

Host

Submission details

Submission ID
OK573128.1
Submitting group
Date submitted
2025-02-03 15:01:44 UTC
Date released
2025-02-03 15:06:57 UTC
Earliest release date
2022-07-30

Alignment and QC

Length
1945 (97.2%)
# of SNPs
9
# of deleted bases
189658
# of frame shifts
2
Frame shifts
OPG016:178(nt:190940),OPG015_dup:270-438(nt:191859-192367)

Nucleotide mutations

Mutations called relative to the NC_063383.1 reference

Substitutions

  • T4443C
  • T4619C
  • C5441A
  • C5809T
  • C190772A
  • A191691C
  • T191863C
  • A194456T
  • A194939T
Deletions

4446-4614, 4623-4680, 6188-190541, 190899-190939, 190945-191038, 191042-191681, 191692-191858, 191868-192386, 192391-194207, 194214-194448, 194462-194938, 194948-196034
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_063383.1 reference

Substitutions

OPG015

  • OPG015:W239L

OPG016

  • OPG016:D121E
Deletions
N/A
Insertions
N/A

Report an issue with this sequence or metadata

Create GitHub issue