PP_000T95U.2

USA/PP_000T95U.2
S. Hunt, N. Shashan, L. Tallon, L. Sadzewicz, K. Vavikolanu, A. Mehta, J. Aluvathingal, S. Nadendla, T. Myers, Y. Yan & H. Sichtig

US Food and Drug Administration, Center for Devices and Radiological Health

Sample details

Sampling location
USA (MD)
Isolate name
WRAIR 7-61

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2024-12-09 18:48insdc_ingest_userOPEN
Data use terms URL

Clade & Lineage

Clade
IIa
Outbreak
None
Lineage
None

INSDC

INSDC accession
BioProject accession
BioSample accession
NCBI release date
2022-07-30
NCBI update date
2022-07-30
Raw reads accession

Host

Host

Submission details

Submission ID
OK573127.1
Submitting group
Date submitted
2025-02-03 15:01:44 UTC
Date released
2025-02-03 15:06:57 UTC
Earliest release date
2022-07-30

Alignment and QC

Length
1947 (67%)
# of SNPs
251
# of inserted bases
66
# of deleted bases
130208
# of frame shifts
13
# of stop codons
1
Frame shifts
OPG047:99-483(nt:29746-30900),OPG049:8-25(nt:33078-33131),OPG049:36-124(nt:32781-33046),OPG049:135-191(nt:32581-32749),OPG049:200-205(nt:32539-32554),OPG049:211-216(nt:32506-32523),OPG049:223-245(nt:32419-32485),OPG049:247-285(nt:32298-32413),OPG049:301-319(nt:32195-32251),OPG050:13-33(nt:33312-33372),OPG050:46-76(nt:33181-33274),OPG051:45-63(nt:33463-33517),OPG051:75(nt:33425-33427)
Stop Codons
OPG049:217

Nucleotide mutations

Mutations called relative to the NC_063383.1 reference

Substitutions

  • C31454A
  • G31793A
  • A32178C
  • T32179C
  • T32182A
  • A32183C
  • T32185A
  • T32188A
  • T32189A
  • T32191A
  • G32209A
  • C32211A
  • G32212A
  • A32213C
  • C32214A
  • C32219T
  • T32221G
  • G32223C
Deletions

30678-30741, 30749-30897, 30901-31133, 32195-32205, 32234-32237, 32252-32273, 32279-32297, 32309-32327, 32336-32347, 32356-32379, 32429-32444, 32453-32458, 32464-32474, 32486, 32487, 32524-32527, 32570-32575, 32579, 32580, 32603-32610, 32627-32651, 32668-32681, 32693-32714, 32723-32742, 32774-32780, 32789-32807, 32834, 32835, 32894, 32895, 32899-32907, 32927-32941, 32951-32960,...
Insertions

ins_32387:C, ins_32407:TTC, ins_32413:TTTC, ins_32418:GC, ins_32422:GAA, ins_32505:G, ins_32538:GCCA, ins_32548:GCCTTG, ins_32554:AAAGAAGG, ins_32560:GGGCTC, ins_32749:A, ins_32849:GTCTGC, ins_32854:GATTTCGC, ins_32887:GAGTGA, ins_33025:A, ins_33420:GTTG, ins_33427:AA

Amino acid substitutions

Substitutions called relative to the NC_063383.1 reference

Substitutions

OPG049

  • OPG049:S217*
  • OPG049:Q218H
  • OPG049:N219K
  • OPG049:S221R

OPG051

  • OPG051:E38L
  • OPG051:A39S
  • OPG051:E42Q
  • OPG051:T68L
  • OPG051:I69C
Deletions

OPG047

OPG047:22-98

OPG049

OPG049:26, OPG049:27, OPG049:34, OPG049:35, OPG049:125, OPG049:126, OPG049:192-194, OPG049:209, OPG049:210, OPG049:286-300

OPG050

OPG050:2-12, OPG050:34, OPG050:38-45

OPG051

OPG051:44, OPG051:64, OPG051:70-73
Insertions

OPG049

ins_OPG049:37:F, ins_OPG049:197:EP, ins_OPG049:208:XWH*R

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