PP_000T94W.2

USA/PP_000T94W.2
S. Hunt, N. Shashan, L. Tallon, L. Sadzewicz, K. Vavikolanu, A. Mehta, J. Aluvathingal, S. Nadendla, T. Myers, Y. Yan & H. Sichtig

US Food and Drug Administration, Center for Devices and Radiological Health

Sample details

Sampling location
USA (MD)
Isolate name
WRAIR 7-61

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2024-12-09 18:48insdc_ingest_userOPEN
Data use terms URL

Clade & Lineage

Clade
IIa
Outbreak
None
Lineage
None

INSDC

INSDC accession
BioProject accession
BioSample accession
NCBI release date
2022-07-30
NCBI update date
2022-07-30
Raw reads accession

Host

Host

Submission details

Submission ID
OK573126.1
Submitting group
Date submitted
2025-02-03 15:01:44 UTC
Date released
2025-02-03 15:04:56 UTC
Earliest release date
2022-07-30

Alignment and QC

Length
2221 (2.19%)
# of SNPs
134
# of inserted bases
13
# of deleted bases
2105
# of frame shifts
6
Frame shifts
OPG029:6-8(nt:17048-17054),OPG029:11-64(nt:16878-17039),OPG029:69-156(nt:16602-16865),OPG030:206-207(nt:17213-17220),OPG034:123-124(nt:19635-19640),OPG034:137-208(nt:19384-19599)

Nucleotide mutations

Mutations called relative to the NC_063383.1 reference

Substitutions

  • C16860A
  • G16864C
  • A16870G
  • A16882C
  • A17020C
  • A17042G
  • G17049A
  • T17053C
  • T17059G
  • A17080G
  • T17081G
  • G17082A
  • T17088C
  • G17089C
  • T17092A
  • T17155G
  • T17156A
  • T17157G
Deletions

16866, 16873-16877, 16886-17017, 17024-17031, 17040, 17041, 17046, 17047, 17055, 17064-17077, 17094-17151, 17169-17175, 17192-17200, 17221-17276, 19028, 19042-19050, 19060-19064, 19067-19070, 19078-19083, 19116, 19124, 19135-19146, 19155-19157, 19163, 19164, 19180-19205, 19213-19230, 19251, 19258-19262, 19275, 19276, 19289-19300, 19308-19320, 19332-19334, 19349-19357, 19382, 19383,...
Insertions

ins_17188:TG, ins_17215:ATT, ins_19127:ATAGTA, ins_19236:T, ins_19640:C

Amino acid substitutions

Substitutions called relative to the NC_063383.1 reference

Substitutions

OPG031

  • OPG031:M271K

OPG034

  • OPG034:L211S
  • OPG034:M212N
  • OPG034:S213A
  • OPG034:K214R
Deletions

OPG029

OPG029:9, OPG029:10, OPG029:65-68

OPG030

OPG030:187-205

OPG034

OPG034:125-136
Insertions
N/A

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