PP_000T920.2

USA/PP_000T920.2
S. Hunt, N. Shashan, L. Tallon, L. Sadzewicz, K. Vavikolanu, A. Mehta, J. Aluvathingal, S. Nadendla, T. Myers, Y. Yan & H. Sichtig

US Food and Drug Administration, Center for Devices and Radiological Health

Sample details

Sampling location
USA (MD)
Isolate name
WRAIR 7-61

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2024-12-09 18:48insdc_ingest_userOPEN
Data use terms URL

Clade & Lineage

Clade
IIa
Outbreak
None
Lineage
None

INSDC

INSDC accession
BioProject accession
BioSample accession
NCBI release date
2022-07-30
NCBI update date
2022-07-30
Raw reads accession

Host

Host

Submission details

Submission ID
OK573124.1
Submitting group
Date submitted
2025-02-03 15:01:44 UTC
Date released
2025-02-03 15:04:56 UTC
Earliest release date
2022-07-30

Alignment and QC

Length
2488 (16.1%)
# of SNPs
15
# of inserted bases
1
# of deleted bases
29352

Nucleotide mutations

Mutations called relative to the NC_063383.1 reference

Substitutions

  • T144594A
  • A144597G
  • A144836C
  • A144839G
  • A145517T
  • A145875G
  • C145936T
  • A145937C
  • T145938G
  • C147053T
  • T147860C
  • A147926T
  • A148124G
  • G148126A
  • C148542T
Deletions

144601-144831, 144841-145511, 145520-145868, 145879-145895, 145899-145933, 145949-145958, 145962-146023, 146029-147047, 148317, 149408-150841, 150848-160115, 160124-161841, 161848-166592, 166602-170695, 170704-171445, 171454-173547, 173555-173761, 173768-176422
Insertions

ins_148351:A

Amino acid substitutions

Substitutions called relative to the NC_063383.1 reference

Substitutions

OPG167

  • OPG167:F174S
  • OPG167:L175R
  • OPG167:F176M
  • OPG167:Y177P

OPG172

  • OPG172:M145T
  • OPG172:D167V

OPG173

  • OPG173:T30A

OPG174

  • OPG174:C285Y
Deletions
N/A
Insertions
N/A

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