PP_000T904.2

USA/PP_000T904.2
S. Hunt, N. Shashan, L. Tallon, L. Sadzewicz, K. Vavikolanu, A. Mehta, J. Aluvathingal, S. Nadendla, T. Myers, Y. Yan & H. Sichtig

US Food and Drug Administration, Center for Devices and Radiological Health

Sample details

Sampling location
USA (MD)
Isolate name
WRAIR 7-61

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2024-12-09 18:48insdc_ingest_userOPEN
Data use terms URL

Clade & Lineage

Clade
IIb
Outbreak
sh2017
Lineage
B.1.1

INSDC

INSDC accession
BioProject accession
BioSample accession
NCBI release date
2022-07-30
NCBI update date
2022-07-30
Raw reads accession

Host

Host

Submission details

Submission ID
OK573122.1
Submitting group
Date submitted
2025-02-03 15:01:44 UTC
Date released
2025-02-03 15:04:56 UTC
Earliest release date
2022-07-30

Alignment and QC

Length
2596 (3.64%)
# of SNPs
348
# of inserted bases
172
# of deleted bases
4756
# of frame shifts
3
Frame shifts
OPG210:1842-1849(nt:186879-186902),OPG210:1856-1860(nt:186919-186934),OPG210:1866-1873(nt:186949-186974)

Nucleotide mutations

Mutations called relative to the NC_063383.1 reference

Substitutions

  • A186866G
  • T186869G
  • A186873G
  • G186876T
  • C186877G
  • C186879T
  • G186880A
  • A186886T
  • A186887T
  • A186889T
  • A186891T
  • C186895G
  • G186898C
  • A186901G
  • T186903C
  • G186906T
  • A186909C
  • C186923T
Deletions

186915-186918, 186935-186942, 186948, 186975-186997, 187015-187033, 187054-187062, 187068-187073, 187094-187113, 187130, 187131, 187137, 187152-187172, 187204-187210, 187217-187221, 187232-187235, 187247, 187300-187305, 187310-187312, 187332, 187333, 187339-187344, 187368-187370, 187378, 187391-187394, 187419-187425, 187436-187441, 187452-187462, 187502, 187510, 187511, 187530, 187584,...
Insertions

ins_186878:T, ins_186887:TGACTT, ins_186902:GTTATTTT, ins_187002:G, ins_187124:C, ins_187190:CGG, ins_187253:TATGC, ins_187261:AAAAT, ins_187270:CC, ins_187276:AGG, ins_187285:T, ins_187290:G, ins_187318:GAT, ins_187382:ATAAGAAAATTTTA, ins_187404:CA, ins_187410:G, ins_187416:T, ins_187446:G, ins_187468:A, ins_187484:TAATAAT, ins_187546:GGTTTTCCTGAACGTTGAT, ins_187560:A,...

Amino acid substitutions

Substitutions called relative to the NC_063383.1 reference

Substitutions

OPG005

  • OPG005:N74D

OPG210

  • OPG210:I1838M
  • OPG210:I1840V
  • OPG210:A1841W
  • OPG210:M1853Y
Deletions

OPG210

OPG210:1854, OPG210:1855, OPG210:1861-1863, OPG210:1865
Insertions
N/A

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