PP_000T8XA.1

USA/PP_000T8XA.1
S. Hunt, N. Shashan, L. Tallon, L. Sadzewicz, K. Vavikolanu, A. Mehta, J. Aluvathingal, S. Nadendla, T. Myers, Y. Yan & H. Sichtig

US Food and Drug Administration, Center for Devices and Radiological Health

Sample details

Sampling location
USA (MD)
Isolate name
WRAIR 7-61

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2024-12-09 18:48insdc_ingest_userOPEN
Data use terms URL

Clade & Lineage

Clade
IIa
Outbreak
None
Lineage
None

INSDC

INSDC accession
BioProject accession
BioSample accession
NCBI release date
2022-07-30
NCBI update date
2022-07-30

Host

Host

Submission details

Submission ID
OK573119.1
Submitting group
Date submitted
2024-12-09 18:47:55 UTC
Date released
2024-12-09 18:51:44 UTC
Earliest release date
2022-07-30

Alignment and QC

Length
3126 (17.5%)
# of SNPs
48
# of inserted bases
4
# of deleted bases
31328
# of frame shifts
5
# of stop codons
1
Frame shifts
OPG105:840-852(nt:83641-83681),OPG105:865-867(nt:83717-83726),OPG105:880-910(nt:83762-83855),OPG105:947-948(nt:83962-83969),OPG105:970-1287(nt:84032-84986)
Stop Codons
OPG105:934

Nucleotide mutations

Mutations called relative to the NC_063383.1 reference

Substitutions

  • C83641T
  • A83646G
  • A83657C
  • T83662C
  • A83665T
  • C83671G
  • C83672G
  • A83673T
  • T83675G
  • G83678C
  • T83681C
  • G83699C
  • C83703T
  • T83706C
  • T83720G
  • A83721G
  • G83724C
  • T83725G
Deletions

83607-83633, 83637-83640, 83649-83652, 83682-83698, 83710-83716, 83727-83755, 83761, 83778-83807, 83811-83844, 83856-83913, 83928-83961, 83970-83989, 84006-84031, 86890-117926
Insertions

ins_83657:T, ins_83663:CCT

Amino acid substitutions

Substitutions called relative to the NC_063383.1 reference

Substitutions

OPG105

  • OPG105:V933A
  • OPG105:L934*

OPG107

  • OPG107:K153E
Deletions

OPG105

OPG105:853-864, OPG105:868-879, OPG105:911-930, OPG105:935-946, OPG105:949-955, OPG105:961-969
Insertions
N/A

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