PP_000T8WC.2

USA/PP_000T8WC.2
S. Hunt, N. Shashan, L. Tallon, L. Sadzewicz, K. Vavikolanu, A. Mehta, J. Aluvathingal, S. Nadendla, T. Myers, Y. Yan & H. Sichtig

US Food and Drug Administration, Center for Devices and Radiological Health

Sample details

Sampling location
USA (MD)
Isolate name
WRAIR 7-61

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2024-12-09 18:48insdc_ingest_userOPEN
Data use terms URL

Clade & Lineage

Clade
IIa
Outbreak
None
Lineage
None

INSDC

INSDC accession
BioProject accession
BioSample accession
NCBI release date
2022-07-30
NCBI update date
2022-07-30
Raw reads accession

Host

Host

Submission details

Submission ID
OK573118.1
Submitting group
Date submitted
2025-02-03 15:01:44 UTC
Date released
2025-02-03 15:04:56 UTC
Earliest release date
2022-07-30

Alignment and QC

Length
3480 (2.08%)
# of SNPs
527
# of inserted bases
189
# of deleted bases
813
# of frame shifts
25
Frame shifts
OPG197:52-59(nt:169821-169844),OPG197:69-90(nt:169874-169939),OPG197:93-99(nt:169944-169966),OPG198:7-52(nt:170056-170193),OPG198:56-82(nt:170201-170283),OPG198:87-99(nt:170295-170334),OPG198:117-151(nt:170385-170490),OPG198:157-174(nt:170505-170559),OPG198:184-216(nt:170586-170684),OPG198:224-240(nt:170707-170756),OPG198:248-258(nt:170778-170811),OPG198:278-283(nt:170868-170886),...

Nucleotide mutations

Mutations called relative to the NC_063383.1 reference

Substitutions

  • A169812T
  • A169816T
  • A169817T
  • A169822T
  • A169825T
  • G169829A
  • A169834T
  • T169836C
  • A169839C
  • A169842T
  • T169846C
  • A169849G
  • A169876G
  • A169880G
  • T169882C
  • G169884A
  • G169886A
  • A169887T
Deletions

169855-169873, 169904-169908, 169931-169933, 169967-169970, 170017-170025, 170032, 170038-170041, 170065-170067, 170079-170086, 170104-170107, 170140-170150, 170194, 170219-170221, 170260, 170284, 170291-170294, 170335-170347, 170354-170384, 170428-170469, 170482, 170491, 170503, 170504, 170515-170538, 170548, 170549, 170560, 170561, 170575-170577, 170584, 170585, 170593-170613,...
Insertions

ins_169820:GTACT, ins_169844:C, ins_169894:CTAGGTATAGTCTGCAA, ins_169939:AATC, ins_169943:C, ins_169957:TTG, ins_169995:AC, ins_170003:TATGG, ins_170055:C, ins_170111:ACGTTG, ins_170170:CACGTCTCTTATCGGTC, ins_170200:ACCG, ins_170244:T, ins_170313:TTACT, ins_170319:T, ins_170321:AG, ins_170412:CGT, ins_170695:TCTGCGTTT, ins_170706:A, ins_170727:C, ins_170844:TAA, ins_170862:GGTTTCGTT,...

Amino acid substitutions

Substitutions called relative to the NC_063383.1 reference

Substitutions

OPG197

  • OPG197:T28L
  • OPG197:D29R
  • OPG197:I39H
  • OPG197:M40K
  • OPG197:E92A

OPG198

  • OPG198:T178F
  • OPG198:Q268Y
  • OPG198:T269L

OPG199

  • OPG199:S10G
  • OPG199:K146E
  • OPG199:E147I
  • OPG199:P153S
  • OPG199:Y170V
  • OPG199:A177W
  • OPG199:S178E
  • OPG199:E181L

OPG200

  • OPG200:M1I
  • OPG200:A3T
  • OPG200:N4C
Deletions

OPG197

OPG197:63-68

OPG198

OPG198:53, OPG198:83, OPG198:86, OPG198:100-104, OPG198:107-116, OPG198:152-156, OPG198:175, OPG198:176, OPG198:180, OPG198:183, OPG198:217-223, OPG198:241-247, OPG198:259

OPG199

OPG199:4-7, OPG199:11-14, OPG199:107-129, OPG199:133-138, OPG199:144, OPG199:154, OPG199:155, OPG199:168, OPG199:183-187, OPG199:207-210, OPG199:219-227, OPG199:240-242, OPG199:249-258, OPG199:266-270, OPG199:274-288, OPG199:308, OPG199:312-316
Insertions

OPG198

ins_OPG198:249:ICVYVTR, ins_OPG198:279:*DRHDCQI*RHHVTVGFVRG

OPG199

ins_OPG199:178:R*KKREERRN, ins_OPG199:195:CN*ASQAS, ins_OPG199:309:AHE

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